[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 420 items for (author: wei & ws)

EMDB-70605:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

EMDB-70685:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

PDB-9om3:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

PDB-9op9:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

EMDB-72508:
BS3-crosslinked Smoothened/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74330:
SMO/PKA-C complex, mixed prior to grid preparation
Method: single particle / : Liu G, Myers BR

EMDB-74331:
SMO/PKA-C complex in MSP1E3D1 nanodiscs
Method: single particle / : Liu G, Myers BR

EMDB-74332:
Disulfide-trapped SMO-L637C/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74333:
EDC/Sulfo-NHS-crosslinked SMO/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74334:
SMO/PKA-C complex, dual EDC/Sulfo-NHS and BS3 crosslinking
Method: single particle / : Liu G, Myers BR

EMDB-65885:
GMPCPP-stabilizsd human alpha1A/beta3 microtubule
Method: single particle / : Ti SC, Luo JY, Khoo CJ

EMDB-65886:
GMPCPP-stabilized human alpha1A/beta3 S239C microtubule
Method: single particle / : Ti SC, Luo JY, Khoo CJ

EMDB-65887:
Paclitaxel/GMPCPP-stabilized human alpha1A/beta3 microtubule
Method: single particle / : Ti SC, Luo JY, Khoo CJ

EMDB-65888:
Paclitaxel/GMPCPP-stabilized human alpha1A/beta3 S239C microtubule
Method: single particle / : Ti SC, Luo JY, Khoo CJ

EMDB-68133:
GDP human alpha1A/beta3 S239C microtubule
Method: single particle / : Ti SC, Luo JY, Khoo CJ

EMDB-68134:
GDP human alpha1A/beta3 microtubule
Method: single particle / : Ti SC, Luo JY, Khoo CJ

EMDB-70517:
Anthoceros agrestis Rubisco (8 RbcL and 8 RbcS1) head to head stacking.
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-70520:
A. agrestis Rubisco (8 RbcL 7 RbcS 1 RbcS-STAR)
Method: single particle / : Ang WSL, Oh ZG, Li FW, Gunn LH

EMDB-49589:
A membrane protein with cofactor determined by single-particle CryoEM
Method: single particle / : Suder DS, Gonen S

EMDB-49622:
Structure of photoactivated rhodopsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

PDB-9nnz:
Structure of rod opsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

PDB-9noz:
Structure of photoactivated rhodopsin in complex with a megabody
Method: single particle / : Suder DS, Gonen S

EMDB-53472:
Cryo-EM structure of rat SLCO2A1 in the apo state.
Method: single particle / : Deme JC, Goult J, Lea SM, Newstead S

EMDB-53481:
Cryo-EM structure of rat SLCO2A1 bound to zafirlukast.
Method: single particle / : Joshi C, Newstead S

EMDB-53482:
Cryo-EM structure of rat SLCO2A1 bound to fentiazac.
Method: single particle / : Joshi C, Newstead S

EMDB-53483:
Cryo-EM structure of rat SLCO2A1 bound to losartan.
Method: single particle / : Joshi C, Newstead S

EMDB-53484:
Cryo-EM structure of rat SLCO2A1 bound to prostaglandin E2.
Method: single particle / : Deme JC, Goult J, Lea SM, Newstead S

EMDB-53485:
Cryo-EM structure of rat SLCO2A1 bound to dinoprost.
Method: single particle / : Deme JC, Joshi C, Lea SM, Newstead S

EMDB-53486:
Cryo-EM structure of rat SLCO2A1 bound to tolcapone.
Method: single particle / : Deme JC, Joshi C, Lea SM, Newstead S

PDB-9qzo:
Cryo-EM structure of rat SLCO2A1 in the apo state.
Method: single particle / : Deme JC, Goult J, Lea SM, Newstead S

PDB-9r07:
Cryo-EM structure of rat SLCO2A1 bound to zafirlukast.
Method: single particle / : Joshi C, Newstead S

PDB-9r0a:
Cryo-EM structure of rat SLCO2A1 bound to fentiazac.
Method: single particle / : Joshi C, Newstead S

PDB-9r0i:
Cryo-EM structure of rat SLCO2A1 bound to losartan.
Method: single particle / : Joshi C, Newstead S

PDB-9r0m:
Cryo-EM structure of rat SLCO2A1 bound to prostaglandin E2.
Method: single particle / : Deme JC, Goult J, Lea SM, Newstead S

PDB-9r0n:
Cryo-EM structure of rat SLCO2A1 bound to dinoprost.
Method: single particle / : Deme JC, Joshi C, Lea SM, Newstead S

PDB-9r0o:
Cryo-EM structure of rat SLCO2A1 bound to tolcapone.
Method: single particle / : Deme JC, Joshi C, Lea SM, Newstead S

EMDB-49945:
Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State
Method: single particle / : Huang W, Salom-Arbona D, Suder D, Taylor DJ, Palczewski K

PDB-9nyx:
Structure of Native Bovine Rhodopsin in Complex with Mb7 in the Dark State
Method: single particle / : Huang W, Salom-Arbona D, Suder D, Taylor DJ, Palczewski K

EMDB-49942:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

PDB-9nyr:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

EMDB-71091:
Cas1-Cas2/3 integrase, heterohexameric assembly
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71097:
Cas1-Cas2/3 integrase bound to foreign dsDNA fragment
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71101:
Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, first transesterification
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71112:
Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, CRISPR leader association
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71114:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, CRISPR leader association
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71115:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, first transesterification
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71116:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, full repeat
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-45224:
Cryo EM structure of DCAF2
Method: single particle / : McMahon EJ, Wang W

EMDB-45225:
Cryo EM structure of DCAF2:Compound 1 complex
Method: single particle / : McMahon EJ, Wang W

EMDB-45226:
Cryo EM structure of a DCAF2:degrader:BRD4 ternary complex
Method: single particle / : McMahon EJ, Wang W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more