[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 775 items for (author: wang & sl)

EMDB-73703:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73704:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73705:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73707:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex (RECC), tRNA focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73706:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

PDB-9z0h:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2)
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-52224:
ROCK2 bound with TDI01
Method: single particle / : Aijia W, Shenghai C, Qinghua L, Yan H, Haohao D, Bisen D

EMDB-70787:
Designed one-component T=3 quasisymmetric protein nanocage
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70792:
Designed one-component T=3 quasisymmetric protein nanocage pentamer sub-particle region
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70797:
Designed one-component T=13 quasisymmetric protein nanocage pentamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70798:
Designed one-component T=13 quasisymmetric protein nanocage hexamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-53943:
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-54009:
Manikomycin bound to the Escherichia coli 70S ribosome
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

PDB-9rfw:
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

PDB-9rja:
Manikomycin bound to the Escherichia coli 70S ribosome
Method: single particle / : Kaur M, Travin D, Berger MJ, Jangra M, Morici M, Safdari HA, Guitor AK, Koteva K, Xu M, Chen X, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright G

EMDB-75049:
Human Excitatory Amino Acid Transporter 3 in 300 mM potassium and 0.1 mM Cmpd 3e in the outward-facing (OFS) state
Method: single particle / : Earsley A, Qiu B, Boudker O

EMDB-75048:
Human Excitatory Amino Acid Transporter 3 in 300 mM potassium and 0.1 mM Cmpd 3e in the intermediate outward-facing (iOFS) state
Method: single particle / : Earsley A, Qiu B, Boudker O

EMDB-72527:
Negative stain map of A/California/07/2009 H1N1 HA in complex with 97_F7 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72528:
Negative stain map of A/California/07/2009 H1N1 HA in complex with 88_B4 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72529:
Negative stain map of A/California/07/2009 H1N1 HA in complex with 3_H2 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72530:
Negative stain map of A/California/07/2009 H1N1 HA in complex with 49_C09 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72531:
Negative stain map of A/California/07/2009 H1N1 HA in complex with 33_C08 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72532:
Negative stain map of A/California/07/2009 H1N1 HA in complex with 33_C02 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72533:
Negative stain map of A/California/07/2009 H1N1 HA in complex with 18_D11 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72534:
Negative stain map of A/New York/631/1996 H3N2 HA in complex with 97_F7 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72535:
Negative stain map of A/New York/631/1996 H3N2 HA in complex with 88_B4 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72536:
Negative stain map of A/New York/631/1996 H3N2 HA in complex with 33_C08 IgG
Method: single particle / : Jo G, Ward AB

EMDB-72537:
Negative stain map of A/New York/631/1996 H3N2 HA in complex with 18_D11 IgG
Method: single particle / : Jo G, Ward AB

EMDB-56516:
In situ Dictyostelium discoideum cytosolic vault
Method: subtomogram averaging / : Geissler K, Kreysing JP, Beck M

EMDB-54248:
Trispecific fab 17 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-54261:
Trispecific fab 34 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-54263:
Trispecific fab 49 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-64387:
PvdL-E2-C3-A3-PCP3 in complex with MLP (NRPS cross-module)
Method: single particle / : Cao W, Wang J, Wang Z

EMDB-54348:
Map A ZSWIM8-CUL3 complex bound to AGO2-miR-7-CYRANO
Method: single particle / : Farnung J, Slobodyanyuk E, Bartel DP, Schulman BA

EMDB-54349:
Map B Locally refined interactions of ZSWIM8-CUL3 complex bound to AGO2-miR-7-CYRANO
Method: single particle / : Farnung J, Slobodyanyuk E, Bartel DP, Schulman BA

EMDB-54350:
Map D Locally refined map of ZSWIM8-CUL3 complex bound to AGO2-miR-7-CYRANO
Method: single particle / : Farnung J, Slobodyanyuk E, Bartel DP, Schulman BA

EMDB-54351:
Map C focused map of ZSWIM8-CUL3 complex bound to AGO2-miR-7-CYRANO
Method: single particle / : Farnung J, Slobodyanyuk E, Bartel DP, Schulman BA

EMDB-54352:
Map E Composite map of ZSWIM8-CUL3 complex bound to AGO2-miR-7-CYRANO
Method: single particle / : Farnung J, Slobodyanyuk E, Bartel DP, Schulman BA

PDB-9rwz:
ZSWIM8-CUL3 complex bound to AGO2-miR-7-CYRANO
Method: single particle / : Farnung J, Slobodyanyuk E, Bartel DP, Schulman BA

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-53311:
Cryo-EM map of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-53341:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the A-tRNA positioned (Body open) state.
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

EMDB-55145:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

PDB-9qqq:
Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Method: single particle / : Morici M, Corazza M, Safdari HA, Wilson DN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more