[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 965 items for (author: wan & dd)

EMDB-66205:
Cryo-EM structure of DAMGO-muOR-Gz-scFv16 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66207:
Cryo-EM structure of DAMGO-muOR-arrestin-1-Fab30 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66208:
Cryo-EM structure of endomorphin-1-muOR-Gz-scFv16 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-66209:
Cryo-EM structure of endomorphin-1-muOR-arrestin2-Fab30 complex
Method: single particle / : Zhang H, Wang X, Xi K, Shen Q, Xue J, Zhu Y, Yang G, Zhang Y

EMDB-62623:
Local map(dC-RTC) of pre-CI RTC
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62625:
nsp13-1 bound with RNA(local map of pre CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62638:
nsp13-2 bound with RNA(local map of pre-CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62639:
nsp13-1 apo(local map of Pre-CI RTC)
Method: single particle / : Liming Yan LM, Yucen Huang YH, Yixiao Liu YL, Ji Ge JG, Shan Gao SG, Liping Tan LP, Lu Liu LL, Lan Zhu LZ, Zhiyong Lou ZL, Zihe Rao ZR

EMDB-62643:
PltBd1/PltBd2 heteropentameric holotoxin from S. diarizonae
Method: single particle / : Chen Z, Wang DD, Gao X

EMDB-62644:
PltBd1/PltBd2 heteropentameric holotoxin from E. coli
Method: single particle / : Chen Z, Wang DD, Gao X

EMDB-62645:
PltBd1 homopentameric holotoxin from E. coli
Method: single particle / : Chen Z, Wang DD, Gao X

EMDB-62646:
PltBd2 homopentameric holotoxin from E. coli
Method: single particle / : Chen Z, Wang DD, Gao X

EMDB-72200:
Structure of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Streptococcus plurextorum
Method: single particle / : Subramanian S, Gatreddi S, Hausinger RP, Hu J, Parent KN

PDB-9q3k:
Structure of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Streptococcus plurextorum
Method: single particle / : Subramanian S, Gatreddi S, Hausinger RP, Hu J, Parent KN

EMDB-72199:
Structures of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Blautia wexlerae
Method: single particle / : Subramanian S, Gatreddi S, Hausinger RP, Hu J, Parent KN

PDB-9q3j:
Structures of LarA-like nickel-pincer nucleotide cofactor-utilizing enzyme with a single catalytic histidine residue from Blautia wexlerae
Method: single particle / : Subramanian S, Gatreddi S, Hausinger RP, Hu J, Parent KN

EMDB-46758:
Cryo-EM structure of neutralizing murine antibody WS.HSV-1.24 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-46759:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E.DS
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46760:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46761:
Cryo-EM structure of neutralizing human antibody D48 in complex with HSV-1 glycoprotein B trimer gB-Ecto.516P.531E
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-46762:
Cryo-EM structure of gB-Ecto.516P.531E.DS, a prefusion-stabilized HSV-1 glycoprotein B extracellular domain
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-46765:
Cryo-EM structure of gB-Ecto.516P, an HSV-1 glycoprotein B extracellular domain
Method: single particle / : Roark RS, Lawrence L, Kwong PD

EMDB-60692:
SARS-CoV-2 Replication-Transcription Complex has a dimer architecture (dRTC) in post-capping state
Method: single particle / : Yan LM, Rao ZH, Lou ZY

EMDB-60693:
SARS-CoV-2 Replication-Transcription Complex has a dimer architecture (local dRTC) in post-capping state
Method: single particle / : Yan LM, Rao ZH, Lou ZY

PDB-9imk:
SARS-CoV-2 Replication-Transcription Complex has a dimer architecture (dRTC) in post-capping state
Method: single particle / : Yan LM, Rao ZH, Lou ZY

PDB-9imm:
SARS-CoV-2 Replication-Transcription Complex has a dimer architecture (local dRTC) in post-capping state
Method: single particle / : Yan LM, Rao ZH, Lou ZY

EMDB-62298:
Cryo-EM structure of the compound 4-bound human relaxin family peptide receptor 3 (RXFP3)-Gi complex
Method: single particle / : Chen Y, Zhou QT, Yan SY, Yan JH, Yang DH, Chen J, Wang MW, Rao QD, Dai AT, Yin WC, Shen DD, Zhang Y, Xia T, Stevens RC, Xu HE, Zhao LH

EMDB-54402:
Structure of in-vivo formed alpha-synuclein fibrils purified from a M83+/- mouse brain injected with recombinant 1B fibrils
Method: helical / : van den Heuvel L, Burger D, Kashyrina M, de La Seigliere H, Lewis AJ, De Nuccio F, Mohammed I, Verchere J, Feuillie C, Berbon M, Arotcarena M, Retailleau A, Bezard E, Canron M, Meissner WG, Loquet A, Bousset L, Poujol C, Nilsson KPR, Laferriere F, Baron T, Lofrumento DD, De Giorgi F, Stahlberg H, Ichas F

EMDB-71288:
Human EAAT3 with compound 3e and cholesterol bound at inward facing state
Method: single particle / : Qiu B, Boudker O

EMDB-71289:
Human EAAT3 with compound 3e and digitonin.glyco-diosgenin bound at inward facing state
Method: single particle / : Qiu B, Boudker O

EMDB-71290:
Human EAAT3 with sodium bound at inward facing state
Method: single particle / : Qiu B, Boudker O

PDB-9p4x:
Human EAAT3 with compound 3e and cholesterol bound at inward facing state
Method: single particle / : Qiu B, Boudker O

PDB-9p4y:
Human EAAT3 with compound 3e and digitonin.glyco-diosgenin bound at inward facing state
Method: single particle / : Qiu B, Boudker O

PDB-9p4z:
Human EAAT3 with sodium bound at inward facing state
Method: single particle / : Qiu B, Boudker O

EMDB-70469:
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Method: single particle / : Ozorowski G, Phulera S, Ward AB

EMDB-70470:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (2x 10E8 Fabs)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-70471:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

PDB-9ogl:
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
Method: single particle / : Ozorowski G, Phulera S, Ward AB

PDB-9ogm:
BG505 MD39.3 Env gp151 MPER nanodisc in complex with 10E8, BG18 and VRC01 Fabs (1x 10E8 Fab)
Method: single particle / : Rantalainen K, Ozorowski G, Gharpure A, Ward AB

EMDB-61503:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61504:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61505:
Hepatitis E virus capsid protein E2s domain (genotype IV) in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61506:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C158
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61507:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab C158
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61508:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C127
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61509:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C131
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61510:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C145
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61511:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab H4
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

EMDB-61512:
Hepatitis E virus capsid protein E2s domain (genotype I) in complex with Fab H4
Method: single particle / : Liu L, Zheng Q, Li S, Xia N

PDB-9jie:
Rat hepatitis E virus capsid protein E2s domain in complex with Fab C6
Method: single particle / : Liu L, Zheng Q, Li S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more