[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 192 items for (author: vogt & a)

EMDB-70949:
Distal Ku-Polymerase lambda BRCT
Method: single particle / : Vogt A, He Y

EMDB-70957:
XRCC4-XLF Scafoold
Method: single particle / : Vogt A, He Y

EMDB-70958:
NHEJ Short-range Pol lambda complex (consensus map)
Method: single particle / : Vogt A, He Y

EMDB-70959:
Proximal Ku-LigIV catalytic domain-Pol lambda BRCT
Method: single particle / : Vogt A, He Y

EMDB-70960:
NHEJ Short-range complex with Polymerase lambda
Method: single particle / : Vogt A, He Y

PDB-9ox8:
NHEJ Short-range complex with Polymerase lambda
Method: single particle / : Vogt A, He Y

EMDB-75834:
Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 1
Method: single particle / : Herbine K, Lambris J

EMDB-75835:
Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 2
Method: single particle / : Herbine K, Lambris J

PDB-11mg:
Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 1
Method: single particle / : Herbine K, Lambris J

PDB-11mh:
Cryo-EM Structure of Human C3 Pro-Convertase bound to the Compstatin Analog Cp60, TED Conformation 2
Method: single particle / : Herbine K, Lambris J

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-53279:
Cryo_EM density map of human FAN1 in complex with CAG-2 loop DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Thomsen M

EMDB-52050:
Outward-open structure of human serotonin transporter bound to vilazodone
Method: single particle / : Kalenderoglou IE, Tillmann P, Loland CJ

PDB-9hco:
Outward-open structure of human serotonin transporter bound to vilazodone
Method: single particle / : Kalenderoglou IE, Tillmann P, Loland CJ

EMDB-19844:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-19850:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-51680:
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9eo1:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9eoa:
Cryo_EM structure of human FAN1 in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

PDB-9gy0:
Cryo_EM structure of human FAN1 R507H mutant in complex with 5' flap DNA substrate and PCNA
Method: single particle / : Jeyasankar G, Salerno-Kochan A, Thomsen M

EMDB-19605:
(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8rz7:
(CAG)2 DNA-bound MutSbeta in open form with kinked MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8rz8:
MutSbeta-ATPgS with straight MSH2 clamp
Method: single particle / : Lee JH, Thomsen M, Daub H, Steinbacher S, Sztyler A, Thieulin-Pardo G, Neudegger T, Plotnikov N, Iyer RR, Wilkinson H, Monteagudo E, Felsenfeld DP, Haque T, Finley M, Dominguez C, Vogt TF, Prasad BC

PDB-8ghl:
the Hir complex core
Method: single particle / : Kim HJ, Murakami K

PDB-8ghn:
Composite model of the yeast Hir Complex with Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

EMDB-40006:
Hir complex core
Method: single particle / : Kim HJ, Murakami K

EMDB-40029:
Hir3 Arm/Tail, Hir2 WD40, Hpc2 C-term
Method: single particle / : Kim HJ, Murakami K

EMDB-40030:
Hir1 WD40 domains and Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

EMDB-40037:
Composite map of the Hir complex with Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

EMDB-40078:
Chaetomium thermophilum Hir3
Method: single particle / : Szurgot MR, van Eeuwen T, Kim HJ, Marmorstein R

PDB-8gha:
Hir3 Arm/Tail, Hir2 WD40, C-terminal Hpc2
Method: single particle / : Kim HJ, Murakami K

PDB-8ghm:
Hir1 WD40 domains and Asf1/H3/H4
Method: single particle / : Kim HJ, Murakami K

PDB-8gix:
Chaetomium thermophilum Hir3
Method: single particle / : Szurgot MR, van Eeuwen T, Kim HJ, Marmorstein R

EMDB-35545:
Cryo-EM structure of PI3Kalpha in complex with compound 17
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

PDB-8ils:
Cryo-EM structure of PI3Kalpha in complex with compound 17
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

EMDB-35547:
Cryo-EM structure of PI3Kalpha in complex with compound 18
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

PDB-8ilv:
Cryo-EM structure of PI3Kalpha in complex with compound 18
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

EMDB-35543:
Cryo-EM structure of PI3Kalpha in complex with compound 16
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

PDB-8ilr:
Cryo-EM structure of PI3Kalpha in complex with compound 16
Method: single particle / : Zhou Q, Liu X, Neri D, Li W, Favalli N, Bassi G, Yang S, Yang D, Vogt PK, Wang MW

EMDB-28731:
Dimeric complex of DNA-PKcs
Method: single particle / : Chen S, He Y

EMDB-28732:
NHEJ Long-range complex with PAXX
Method: single particle / : Chen S, He Y

EMDB-28733:
NHEJ Long-range complex with ATP
Method: single particle / : Chen S, He Y

EMDB-28734:
DNA-PKcs monomer in dimer DNA-PKcs complex
Method: single particle / : Chen S, He Y

EMDB-28735:
DNAPKcs-Ku-LigIV(BRCT)-PAXX-DNA subcomplex in PAXX-LR complex
Method: single particle / : Chen S, He Y

EMDB-28736:
XRCC4-XLF-XRCC4 subcomplex of PAXX-LR complex
Method: single particle / : Chen S, He Y

EMDB-28737:
DNA-PKcs without N-terminus in PAXX-LR-ATP complex
Method: single particle / : Chen S, He Y

EMDB-28738:
DNAPKcs-Ku-DNA subcomplex in PAXX-LR-ATP complex
Method: single particle / : Chen S, He Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more