[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 61 items for (author: valencia & a)

EMDB-47570:
DH726-1 Fab bound to hemagglutinin from influenza A/Solomon Islands/3/2006
Method: single particle / : Finney J, Harrison SC, Walsh Jr RM, Kelsoe G

EMDB-46728:
ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46729:
Map with best defined NZF RYBP of ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46730:
Map with best defined RING1B/BMI1 of ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46731:
Composite map of ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46732:
Overall map of ncPRC1RYBP bound to doubly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46733:
ncPRC1RYBP bound to symmetric H2AK119Ub dinucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46734:
Map focused on RYBP/Ub of ncPRC1RYBP bound to symmetric H2AK119Ub dinucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46735:
Map focused on RING1B/BMI1 of ncPRC1RYBP bound to symmetric H2AK119Ub dinucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46736:
Overall map of ncPRC1RYBP bound to asymmetric H2AK119Ub dinucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46737:
Map focused on RYBP/Ub of ncPRC1RYBP bound to asymmetric H2AK119Ub dinucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46738:
Map focused on RING1B/BMI1 of ncPRC1RYBP bound to asymmetric H2AK119Ub dinucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46771:
ncPRC1RYBP bound to H2AK119Ub/H1.4 chromatosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46822:
ncPRC1RYBP Delta-linker mutant bound to singly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-46823:
ncPRC1RYBP bound to unmodified nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

PDB-9dby:
ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

PDB-9dde:
ncPRC1RYBP bound to H2AK119Ub/H1.4 chromatosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

PDB-9dg3:
ncPRC1RYBP Delta-linker mutant bound to singly modified H2AK119Ub nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

PDB-9dgg:
ncPRC1RYBP bound to unmodified nucleosome
Method: single particle / : Godinez-Lopez V, Valencia-Sanchez MI, Armache JP, Armache KJ

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-40790:
Map focused on acidic patch BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-40791:
Overall map of BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

PDB-8svf:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-28163:
Cryo-EM map of octopus sensory receptor CRT1
Method: single particle / : Kang G, Kim JJ, Allard CAH, Valencia-Montoya WA, Bellono NW, Hibbs RE

PDB-8eis:
Cryo-EM structure of octopus sensory receptor CRT1
Method: single particle / : Kang G, Kim JJ, Allard CAH, Valencia-Montoya WA, Bellono NW, Hibbs RE

EMDB-28167:
Cryo-EM map of squid sensory receptor CRB1
Method: single particle / : Kang G, Kim JJ, Allard CAH, Valencia-Montoya WA, van Giesen L, Kilian PB, Bai X, Bellono NW, Hibbs RE

PDB-8eiz:
Cryo-EM structure of squid sensory receptor CRB1
Method: single particle / : Kang G, Kim JJ, Allard CAH, Valencia-Montoya WA, van Giesen L, Kilian PB, Bai X, Bellono NW, Hibbs RE

EMDB-25606:
Zika Virus particle bound with IgM antibody DH1017 Fab fragment
Method: single particle / : Miller AS, Kuhn RJ

PDB-7t17:
Zika Virus asymmetric unit bound with IgM antibody DH1017 Fab fragment
Method: single particle / : Miller AS, Kuhn RJ

EMDB-23529:
Structure of the Marseillevirus nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S

EMDB-23530:
Marseillevirus heterotrimeric (hexameric) nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S

PDB-7lv8:
Structure of the Marseillevirus nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S, Armache KJ

PDB-7lv9:
Marseillevirus heterotrimeric (hexameric) nucleosome
Method: single particle / : Valencia-Sanchez MI, Abini-Agbomson S, Armache KJ

EMDB-22691:
Active state Dot1 bound to the unacetylated H4 nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE

EMDB-22692:
Active state Dot1 bound to the H4K16ac nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE

EMDB-22693:
Noncatalytic conformation Dot1 bound to the unacetylated H4 nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

EMDB-22694:
Active state Dot1 bound to the H4K16ac nucleosome, Ubiquitin focused map
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

EMDB-22695:
Active state Dot1 bound to the unacetylated H4 nucleosome, Ubiquitin focused map
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

PDB-7k6p:
Active state Dot1 bound to the unacetylated H4 nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

PDB-7k6q:
Active state Dot1 bound to the H4K16ac nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

EMDB-23021:
Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2
Method: single particle / : Grau DJ, Armache KJ

EMDB-23022:
Cryo-EM map of PRC2:EZH1-AEBP2
Method: single particle / : Grau DJ, Armache KJ

EMDB-23024:
PRC2:EZH1_A from a dimeric PRC2 bound to a nucleosome
Method: single particle / : Grau DJ, Armache KJ

EMDB-23025:
PRC2:EZH1_B from a dimeric PRC2 bound to a nucleosome
Method: single particle / : Grau DJ, Armache KJ

EMDB-23026:
Nucleosome from a dimeric PRC2 bound to a nucleosome
Method: single particle / : Grau DJ, Armache KJ

EMDB-23103:
PRC2:EZH1 dimer bound to a nucleosome (composite map)
Method: single particle / : Grau DJ, Armache KJ

PDB-7kso:
Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2
Method: single particle / : Grau DJ, Armache KJ

PDB-7ksr:
PRC2:EZH1_A from a dimeric PRC2 bound to a nucleosome
Method: single particle / : Grau DJ, Armache KJ

PDB-7ktp:
PRC2:EZH1_B from a dimeric PRC2 bound to a nucleosome
Method: single particle / : Grau DJ, Armache KJ

PDB-7ktq:
Nucleosome from a dimeric PRC2 bound to a nucleosome
Method: single particle / : Grau DJ, Armache KJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more