[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 296 items for (author: urakami & a)

EMDB-41497:
Structure of the H-lobe of human MED12
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41500:
Structure of the kinase and central lobes of human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-75669:
Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (open plug state)
Method: single particle / : Narwal M, Shin Y, Murakami KS

EMDB-75680:
Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (transcription initiation complex)
Method: single particle / : Narwal M, Shin Y, Murakami KS

EMDB-75681:
Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (closed plug state)
Method: single particle / : Narwal M, Shin Y, Murakami KS

PDB-11fw:
Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (open plug state)
Method: single particle / : Narwal M, Shin Y, Murakami KS

PDB-11go:
Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (transcription initiation complex)
Method: single particle / : Narwal M, Shin Y, Murakami KS

PDB-11gp:
Cryo-EM structure of the bacteriophage N4 virion RNA polymerase (closed plug state)
Method: single particle / : Narwal M, Shin Y, Murakami KS

EMDB-73305:
Cryo-EM structure of the EBV 1/2 DS bound to the EBNA1 DBD, TRF2, and Rap1
Method: single particle / : Sustek S, Messick TE, Murakami K, Lieberman PM

EMDB-48622:
Structure of a native Drosophila melanogaster Pol II Elongation Complex with a well-defined Rpb4/Rpb7 stalk
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9mu7:
Structure of a native Drosophila melanogaster Pol II Elongation Complex with a well-defined Rpb4/Rpb7 stalk
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-49363:
Cryo-EM map of the inactive conformation of a glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Dolce LG, Santos CR, Murakami MT

EMDB-49364:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

PDB-9nfe:
Active conformation of a redox-regulated glycoside hydrolase (CapGH2b) from the GH2 family
Method: single particle / : Martins MP, Santos CR, Dolce LG, Murakami MT

EMDB-70606:
Cryo-EM structure of filament form Acidithiobacillus caldus (Aca) short prokaryotic argonautes, HNH-associated (SPARHA) with gRNA and tDNA
Method: single particle / : Murakami KS, Narwal M

PDB-9om4:
Cryo-EM structure of filament form Acidithiobacillus caldus (Aca) short prokaryotic argonautes, HNH-associated (SPARHA) with gRNA and tDNA
Method: single particle / : Murakami KS, Narwal M

EMDB-49734:
Methanosarcina acetivorans 50S subunit obtained from acetate-grown cells
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

EMDB-49757:
Methanosarcina acetivorans 50S subunit obtained from methanol-grown cells
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

EMDB-49998:
Cryo-EM structure of Methanosarcina acetivorans 70S ribosome
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

EMDB-70864:
Methanosarcina acetivorans large (50S) subunit dimer
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

PDB-9nri:
Methanosarcina acetivorans 50S subunit obtained from acetate-grown cells
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

PDB-9nta:
Methanosarcina acetivorans 50S subunit obtained from methanol-grown cells
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

PDB-9o17:
Cryo-EM structure of Methanosarcina acetivorans 70S ribosome
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

PDB-9ou7:
Methanosarcina acetivorans large (50S) subunit dimer
Method: single particle / : Ghosh A, Fordjour GNR, Armache JP, Ferry JG, Murakami KS, Bevilacqua PC

EMDB-50645:
Single particle cryo-EM maps of AcrB wildtype monomers reconstituted in salipro nanodiscs
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-50328:
Single particle cryo-EM maps of AcrB wildtype monomer classes in DDM
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

EMDB-50329:
Single particle cryo-EM maps of AcrB V612F monomer classes in DDM
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

EMDB-50331:
Single particle cryo-EM maps of AcrB V612W monomer classes in DDM
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

EMDB-50332:
Single particle cryo-EM maps of AcrB V612F monomer classes in salipro nanodiscs
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-50334:
Single particle cryo-EM structure of the multidrug efflux pump OqxB from Klebsiella pneumoniae
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-50335:
Single particle cryo-EM maps of OqxB monomer classes in salipro nanodiscs
Method: single particle / : Lazarova M, Frangakis A, Pos KM

PDB-9fdp:
Single particle cryo-EM structure of the AcrB V612W monomer in the O state
Method: single particle / : Lazarova M, Boernsen C, Frangakis A, Pos KM

PDB-9fdq:
Single particle cryo-EM structure of the AcrB V612F monomer in the O state
Method: single particle / : Lazarova M, Frangakis A, Pos KM

PDB-9fdz:
Single particle cryo-EM structure of the multidrug efflux pump OqxB from Klebsiella pneumoniae
Method: single particle / : Lazarova M, Frangakis A, Pos KM

EMDB-48623:
Structure of a native Drosophila melanogaster Pol II Elongation Complex without Rpb4/Rpb7 stalk
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9mu8:
Structure of a native Drosophila melanogaster Pol II Elongation Complex without Rpb4/Rpb7 stalk
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48829:
Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Focused refinement of Pol II
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48619:
Structure of a native Drosophila melanogaster octameric nucleosome
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48620:
Structure of a native Drosophila melanogaster hexameric nucleosome
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48621:
Structure of native Drosophila melanogaster DLST
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48624:
Structure of a native Drosophila melanogaster Pol II Elongation Complex
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48625:
Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Overall structure
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48626:
Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Composite map
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48823:
Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Focused refinement of nucleosome
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9mu4:
Structure of a native Drosophila melanogaster octameric nucleosome
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9mu5:
Structure of a native Drosophila melanogaster hexameric nucleosome
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9mu6:
Structure of native Drosophila melanogaster DLST
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

PDB-9mu9:
Structure of a native Drosophila melanogaster Nucleosome Elongation Complex (Pol II EC-nucleosome). Composite map
Method: single particle / : Venette-Smith NL, Vishwakarma RK, Dollinger R, Schultz J, Venkatakrishnan V, Babitzke P, Anand G, Gilmour DS, Armache JP, Murakami K

EMDB-48117:
Cryo-EM structure of apo-form human DNA polymerase delta
Method: single particle / : Murakami KS, Shin Y

PDB-9ekb:
Cryo-EM structure of apo-form human DNA polymerase delta
Method: single particle / : Murakami KS, Shin Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more