[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 70 items for (author: tillmann & p)

EMDB-53137:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53138:
Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53139:
Cryo-EM structure of the PlPVC1 cap, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53140:
Cryo-EM structure of the PlPVC1 fiber in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53141:
Cryo-EM structure of the PlPVC1 sheath, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-53143:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgl:
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgm:
Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgn:
Cryo-EM structure of the PlPVC1 cap, 6-fold symmetrized (C6), in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgo:
Interaction between PlPVC1 baseplate and fiber in extended state
Method: single particle / : Marin-Arraiza L, Taylor NMI

PDB-9qgp:
Cryo-EM structure of the PlPVC1 sheath, 6-fold symmetrized (C6), in contracted state
Method: single particle / : Marin-Arraiza L, Taylor NMI

EMDB-52050:
Outward-open structure of human serotonin transporter bound to vilazodone
Method: single particle / : Kalenderoglou IE, Tillmann P, Loland CJ

PDB-9hco:
Outward-open structure of human serotonin transporter bound to vilazodone
Method: single particle / : Kalenderoglou IE, Tillmann P, Loland CJ

EMDB-19845:
Outward-open structure of human dopamine transporter bound to cocaine
Method: single particle / : Nielsen JC, Salomon K, Kalenderoglou IE, Bargmeyer S, Pape T, Shahsavar A, Loland CJ

PDB-9eo4:
Outward-open structure of human dopamine transporter bound to cocaine
Method: single particle / : Nielsen JC, Salomon K, Kalenderoglou IE, Bargmeyer S, Pape T, Shahsavar A, Loland CJ

EMDB-19075:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

EMDB-19282:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

EMDB-19283:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsC domain local-refinement map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

EMDB-19284:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsB domain local-refinement map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

EMDB-19286:
consensus map of the V-K CRISPR-associated Transposon Integration Assembly
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

PDB-8rdu:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K composite map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

PDB-8rkt:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

PDB-8rku:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsC domain local-refinement map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

PDB-8rkv:
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsB domain local-refinement map
Method: single particle / : Tenjo-Castano F, Mesa P, Montoya G

EMDB-18313:
Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-18314:
Retron-Eco1 filament with inactive effector (E106A, 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-18315:
Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-18317:
Retron-Eco1 filament (2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-19792:
Retron-Eco1 -1 turn mutant filament with ADP-ribosylated Effector (Consensus refinement)
Method: single particle / : Carabias del Rey A, Montoya G, Pape T

EMDB-19793:
Retron-Eco1 filament with ADP-ribosylated Effector (Consensus refinement)
Method: single particle / : Carabias del Rey A, Montoya G

PDB-8qbk:
Retron-Eco1 filament with ADP-ribosylated Effector (local map with 1 segment)
Method: single particle / : Carabias del Rey A, Montoya G

PDB-8qbl:
Retron-Eco1 filament with inactive effector (E106A, 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

PDB-8qbm:
Retron-Eco1 filament with ADP-ribosylated Effector (full map with 2 segments)
Method: single particle / : Carabias del Rey A, Montoya G

EMDB-15697:
Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon)
Method: single particle / : Tenjo-Castano F, Sofos N, Stella S, Fuglsang A, Pape T, Mesa P, Stutzke LS, Temperini P, Montoya G

EMDB-15698:
Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon)
Method: single particle / : Tenjo-Castano F, Sofos N, Stella S, Molina R, Pape T, Lopez-Mendez B, Stutzke LS, Temperini P, Montoya G

PDB-8axa:
Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon)
Method: single particle / : Tenjo-Castano F, Sofos N, Stella S, Fuglsang A, Pape T, Mesa P, Stutzke LS, Temperini P, Montoya G

PDB-8axb:
Cryo-EM structure of Cas12k-sgRNA binary complex (type V-K CRISPR-associated transposon)
Method: single particle / : Tenjo-Castano F, Sofos N, Stella S, Molina R, Pape T, Lopez-Mendez B, Stutzke LS, Temperini P, Montoya G

EMDB-16088:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (inward-facing conformation)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

EMDB-16292:
Cryo-EM structure of nanodisc-reconstituted human MRP4 withE1202Q mutation (outward-facing occluded conformation)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

EMDB-16293:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (in complex with methotrexate)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

EMDB-16294:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (in complex with topotecan)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

EMDB-16295:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (in complex with prostaglandin E2)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

EMDB-16296:
Cryo-EM structure of native nanodisc-reconstituted wildtype human MRP4 (inward-facing conformation) - no nucleotides/substrates added
Method: single particle / : Bloch MB, Pape TH, Raj I, Taylor NMI

EMDB-16297:
Cryo-EM structure of minimal nanodisc-reconstituted wildtype human MRP4 (inward-facing conformation) - no nucleotides/substrates added
Method: single particle / : Bloch MB, Pape TH, Raj I, Taylor NMI

PDB-8bjf:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (inward-facing conformation)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

PDB-8bwo:
Cryo-EM structure of nanodisc-reconstituted human MRP4 with E1202Q mutation (outward-facing occluded conformation)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

PDB-8bwp:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (in complex with methotrexate)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

PDB-8bwq:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (in complex with topotecan)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

PDB-8bwr:
Cryo-EM structure of nanodisc-reconstituted wildtype human MRP4 (in complex with prostaglandin E2)
Method: single particle / : Raj I, Bloch M, Pape TH, Taylor NMI

EMDB-12827:
Structure of the mini-RNA-guided endonuclease CRISPR-Cas_phi3
Method: single particle / : Carabias del Rey A, Fugilsang A, Montoya G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more