[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 393 items for (author: tanaka & s)

EMDB-63560:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

PDB-9m0p:
Cryo-EM structure of human 80S ribosome in complex with montanine
Method: single particle / : Sakai R, Tanaka Y, Sato K, Tsugita A, Matumoto K, Thaveepornkul L, Chimnaronk S, Takada A, Miyamoto H, Kurokawa R, Yoshida M, Yokoyama T, Evidente A, Tsuge Y, Watari H, Sumiya T

EMDB-64036:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

PDB-9uc6:
Cryo-EM structure of the Lhcp trimer from Ostreococcus tauri at 1.94 angstrom resolution
Method: single particle / : Seki S, Kubota M, Ishii A, Kim E, Tanaka H, Miyata T, Namba K, Kurisu G, Minagawa J, Fujii R

EMDB-63799:
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Method: single particle / : Seki S, Litvin R, Bina D, Tanaka H, Miyata T, Namba K, Kurisu G, Polivka T, Fujii R

PDB-9mcc:
Cryo-EM structure of violaxanthin-chlorophyll-a-binding protein with red shifted Chl a (rVCP) from Trachydiscus minutus at 2.4 angstrom
Method: single particle / : Seki S, Litvin R, Bina D, Tanaka H, Miyata T, Namba K, Kurisu G, Polivka T, Fujii R

EMDB-66703:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66704:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66705:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66706:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66707:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-66708:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbk:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbl:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37N)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbm:
Cryo-EM structure of Sup35NM S17R fibril formed at 37 degrees (S17R37C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbn:
Cryo-EM structure of Sup35NM fibril formed at 4 degrees (Sc4)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbo:
Cryo-EM structure of Sup35NM fibril formed at 37 degrees (Sc37)
Method: helical / : Nomura T, Boyer DR, Tanaka M

PDB-9xbp:
Cryo-EM structure of Sup35NM S17R fibril formed at 4 degrees (S17R4C)
Method: helical / : Nomura T, Boyer DR, Tanaka M

EMDB-63950:
Cryo-EM structure of Leminorella grimontii GatC in the presence of D-xylose
Method: single particle / : Takahashi YS, Kohga H, Shigematsu H, Miyazaki R, Tsukazaki T

EMDB-63951:
Cryo-EM structure of Leminorella grimontii GatC in the absence of D-xylose
Method: single particle / : Takahashi YS, Kohaga H, Shigematsu H, Miyazaki R, Tsukazaki T

EMDB-61579:
Cryo-EM structure of chalcone synthase (CHS) from Physcomitrella patens in the presence of CHIL
Method: single particle / : Sato K, Yokoyama T, Tanaka Y, Imaizumi R, Yasuda A, Yanai T, Yamashita S, Waki T, Tsunashima M, Nakayama T

PDB-9jl6:
Cryo-EM structure of chalcone synthase (CHS) from Physcomitrella patens in the presence of CHIL
Method: single particle / : Sato K, Yokoyama T, Tanaka Y, Imaizumi R, Yasuda A, Yanai T, Yamashita S, Waki T, Tsunashima M, Nakayama T

EMDB-64986:
Cryo-EM structure of human ATP9A in BeF-bound E2P state open form
Method: single particle / : Abe K, Blanco G

EMDB-64987:
Cryo-EM structure of human ATP9A in BeF-bound E2P state closed form
Method: single particle / : Abe K, Blanco G

EMDB-64988:
Cryo-EM structure of human ATP9A (AMPPCP) E2P state open form
Method: single particle / : Abe K, Blanco G

EMDB-64989:
Cryo-EM structure of human ATP9A (AlF) E2P state open form
Method: single particle / : Abe K, Blanco G

PDB-9vdk:
Cryo-EM structure of human ATP9A in BeF-bound E2P state open form
Method: single particle / : Abe K

PDB-9vdl:
Cryo-EM structure of human ATP9A in BeF-bound E2P state closed form
Method: single particle / : Abe K

PDB-9vdm:
Cryo-EM structure of human ATP9A (AMPPCP) E2P state open form
Method: single particle / : Abe K

PDB-9vdn:
Cryo-EM structure of human ATP9A (AlF) E2P state open form
Method: single particle / : Abe K

EMDB-61725:
Cryo-EM Structure of Fructose Dehydrogenase Variant from Gluconobacter japonicus Truncating Heme 1c and C-Terminal Hydrophobic Regions
Method: single particle / : Adachi T, Ichikawa K, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Shirai O

PDB-9jqa:
Cryo-EM Structure of Fructose Dehydrogenase Variant from Gluconobacter japonicus Truncating Heme 1c and C-Terminal Hydrophobic Regions
Method: single particle / : Adachi T, Ichikawa K, Miyata T, Makino F, Tanaka H, Namba K, Sowa K

EMDB-62913:
Arabidopsis GORK WT1
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

EMDB-62915:
Arabidopsis GORK WT5
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

EMDB-62916:
Arabidopsis GORK WT4
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

EMDB-62917:
Arabidopsis GORK WT2
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

EMDB-62918:
Arabidopsis GORK WT3
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

EMDB-62921:
Arabidopsis GORK consensus structure
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

PDB-9l9u:
Arabidopsis GORK WT1
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

PDB-9la0:
Arabidopsis GORK WT5
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

PDB-9la1:
Arabidopsis GORK WT4
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

PDB-9la2:
Arabidopsis GORK WT2
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

PDB-9la3:
Arabidopsis GORK WT3
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

PDB-9la7:
Arabidopsis GORK consensus structure
Method: single particle / : Yamanashi T, Kume T, Sekido N, Muraoka Y, Yokoyama T, Tanaka Y, Uozumi N

EMDB-61212:
Channel Rhodospin from Klebsormidium nitens (KnChR)
Method: single particle / : Wang YZ, Akasaka H, Tanaka T, Sano FK, Shihoya W, Osamu N

PDB-9j7w:
Channel Rhodospin from Klebsormidium nitens (KnChR)
Method: single particle / : Wang YZ, Akasaka H, Tanaka T, Sano FK, Shihoya W, Nureki O

EMDB-63324:
Cryo-EM structure of the histamine H1 receptor-Gs protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63325:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Receptor focused)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63326:
Cryo-EM structure of the histamine H1 receptor-Gi protein complex
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

EMDB-63327:
Cryo-EM structure of the histamine H4 receptor-Gi protein complex (Overall)
Method: single particle / : Matsuzaki Y, Sano FK, Oshima HS, Akasaka H, Kobayashi K, Tanaka T, Itoh Y, Shihoya W, Kise Y, Kusakizako T, Nureki O

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more