[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 458 items for (author: song & di)

EMDB-64610:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 1)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64611:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 2)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64612:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 3)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64614:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 4)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64615:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 2 (focused refinement in chemerin and GPR1)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64616:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 2 (focused refinement in beta-arrestin 2)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64617:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 2 (consensus refinement)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64618:
Composite map of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 2
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-64619:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to beta-arrestin 1 in ligand-free state
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

PDB-9uyh:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 1)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

PDB-9uyi:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 2)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

PDB-9uyj:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 3)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

PDB-9uyl:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 1 (Conformation 4)
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

PDB-9uym:
Composite map of the G protein-coupled receptor 1 (GPR1) bound to chemerin and beta-arrestin 2
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

PDB-9uyn:
Cryo-EM structure of the G protein-coupled receptor 1 (GPR1) bound to beta-arrestin 1 in ligand-free state
Method: single particle / : Cai H, Lin X, Zhao L, He M, Yu J, Zhang B, Ma Y, Xie C, Shui W, Zhao Q, Zhu Y, Wu B

EMDB-70190:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan epitope) following mRNA multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-70192:
HIV-1 N332-GT5 SOSIP in complex with mouse polyclonal antibodies (V3-glycan and gp41-base epitopes) following protein multi antigen prime
Method: single particle / : Torres JL, Ozorowski G, Ward AB

EMDB-61179:
V517F Mutation in USP7 Causes USP7 Inhibitor Resistance by Increasing Steric Hindrance of Inhibitor-Enzyme Binding
Method: single particle / : Yu XK, Fan FY

EMDB-62353:
Cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked diUb (monomeric conformation)
Method: single particle / : Ai HS, Tong ZB, Liu L

EMDB-62354:
cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked triUb (dimeric conformation)
Method: single particle / : Ai HS, Tong ZB, Liu L

EMDB-62355:
cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked triUb (monomeric conformation)
Method: single particle / : Ai HS, Tong ZB, Liu L

EMDB-62356:
cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked diUb (dimeric conformation)
Method: single particle / : Ai HS, Tong ZB, Liu L

PDB-9khs:
Cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked diUb (monomeric conformation)
Method: single particle / : Ai HS, Tong ZB, Liu L

PDB-9kht:
cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked triUb (dimeric conformation)
Method: single particle / : Ai HS, Tong ZB, Liu L

PDB-9m7o:
Cryo-EM structure of Ufd2/Ubc4-ub complex with K29triUb(monomeric conformation)
Method: single particle / : Tong ZB, Liu L

EMDB-48650:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

PDB-9mv0:
Structure of HKU5 spike C-terminal domain in complex with ACE2 from Pipistrellus abramus
Method: single particle / : Li N, Tsybovsky Y, Teng I, Zhou T

EMDB-61190:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61205:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61206:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j6z:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j7k:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j7l:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-53127:
Cryo-EM structure of natively purified Rubrerythrin isolated from OSIT assemblies of the anaerobic extremophile P. furiosus
Method: single particle / : Skalidis I, Song W, Howes S, Foerster F

PDB-9qg1:
Natively purified Rubrerythrin 16-mer from the anaerobic extremophile P. furiosus
Method: single particle / : Skalidis I, Song W, Howes S, Foerster F

EMDB-60744:
Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.
Method: single particle / : Liang S

PDB-9iol:
Cryo-EM structure of the complex of DNA, Ku70/80, and laXLF.
Method: single particle / : Liang S

EMDB-51662:
Subtomogram average of fascin-actin complex
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-51663:
Subtomogram average of three fascins in complex with two actin filaments
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-52503:
Cryo-tomogram of fascin-actin bundles reconstituted in vitro
Method: electron tomography / : Song X, Corbalan-Garcia S, Huiskonen JT

PDB-9gxi:
Subtomogram average of fascin-actin complex
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-60131:
enteropeptidase with E574A
Method: single particle / : Song QY, Ding ZY, Huang HJ

PDB-8ziw:
enteropeptidase with E574A
Method: single particle / : Song QY, Ding ZY, Huang HJ

EMDB-60121:
wtEP-trypsinogen
Method: single particle / : Song QY, Ding ZY, Huang HJ

PDB-8zi4:
Cryo-EM structure of wtEP-trypsinogen
Method: single particle / : Song QY, Ding ZY, Huang HJ

EMDB-60134:
enteropeptidase with N619A
Method: single particle / : Song QY, Ding ZY, Huang HJ

PDB-8ziz:
enteropeptidase with N619A
Method: single particle / : Song QY, Ding ZY, Huang HJ

PDB-8ziv:
wtEP-trypsinogen in Tryp-1
Method: single particle / : Song QY, Ding ZY, Huang HJ

EMDB-60133:
trypsinogen-EP-E574A
Method: single particle / : Song QY, Ding ZY, Huang HJ

PDB-8ziy:
trypsinogen-EP-E574A
Method: single particle / : Song QY, Ding ZY, Huang HJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more