[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 69 items for (author: smith & pr)

EMDB-19066:
TREK2 in OGNG/CHS detergent micelle with biparatopic inhibitory nanobody Nb6158
Method: single particle / : Smith KHM, Tucker SJ

EMDB-41153:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-41154:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-29044:
Structure of Zanidatamab bound to HER2
Method: single particle / : Worrall LJ, Atkinson CE, Sanches M, Dixit S, Strynadka NCJ

PDB-8ffj:
Structure of Zanidatamab bound to HER2
Method: single particle / : Worrall LJ, Atkinson CE, Sanches M, Dixit S, Strynadka NCJ

EMDB-27842:
Structure of Lates calcarifer Twinkle helicase with ATP and DNA
Method: single particle / : Gao Y, Li Z

EMDB-27843:
Structure of Lates calcarifer Twinkle helicase with ATP and DNA, conformer 2
Method: single particle / : Gao Y, Li Z

EMDB-27844:
Structure of Lates calcarifer Twinkle helicase, apo hexamer
Method: single particle / : Gao Y, Li Z

EMDB-27845:
Structure of Lates calcarifer Twinkle helicase, apo heptamer
Method: single particle / : Gao Y, Li Z

PDB-8e2l:
Structure of Lates calcarifer Twinkle helicase with ATP and DNA
Method: single particle / : Gao Y, Li Z

EMDB-26862:
CryoEM structure of the TIR domain from AbTir in complex with 3AD
Method: helical / : Li S, Nanson JD, Manik MK, Gu W, Landsberg MJ, Ve T, Kobe B

PDB-7uxu:
CryoEM structure of the TIR domain from AbTir in complex with 3AD
Method: helical / : Li S, Nanson JD, Manik MK, Gu W, Landsberg MJ, Ve T, Kobe B

EMDB-25376:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J, Xu Z, Walker S, Kulp DW, Pallesen J

PDB-7sq1:
BG505.MD39TS Env trimer in complex with Fab from antibody C05
Method: single particle / : Moore A, Du J, Xu Z, Walker S, Kulp DW, Pallesen J

EMDB-23500:
80S ribosome from mouse bound to eEF2 (Class II)
Method: single particle / : Loerch S, Smith PR, Kunder N, Stanowick AD, Lou TF, Campbell ZT

EMDB-23501:
80S ribosome from mouse bound to eEF2 (Class I)
Method: single particle / : Loerch S, Smith PR, Kunder N, Stanowick AD, Lou TF, Campbell ZT

EMDB-12777:
Nanobody C5 bound to Spike
Method: single particle / : Naismith JH, Weckener M

PDB-7oan:
Nanobody C5 bound to Spike
Method: single particle / : Naismith JH, Weckener M

EMDB-24533:
SARS-CoV-2 spike protein bound to the S2P6 and S2M11 Fab fragments
Method: single particle / : Sauer MM, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-23614:
SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs (Pose-1)
Method: single particle / : Kern DM, Gerber EE, Brohawn SG

EMDB-23616:
SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs (Pose-2)
Method: single particle / : Kern DM, Gerber EE, Brohawn SG

PDB-7m17:
SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs (Pose-1)
Method: single particle / : Kern DM, Gerber EE, Brohawn SG

PDB-7m19:
SN-407-LRRC8A in MSP1E3D1 lipid nanodiscs (Pose-2)
Method: single particle / : Kern DM, Gerber EE, Brohawn SG

EMDB-22491:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22492:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22494:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22497:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Snell G, Veesler D

EMDB-22506:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22507:
SARS-CoV-2 spike in complex with the S2H14 neutralizing antibody Fab fragment (two receptor-binding domains open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22508:
SARS-CoV-2 spike in complex with the S2H14 neutralizing antibody Fab fragment (three receptor-binding domains open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22512:
SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment
Method: single particle / : Walls AC, Park YJ, Tortorici MA, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22516:
SARS-CoV-2 spike in complex with the S2X35 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22517:
SARS-CoV-2 spike in complex with the S2X35 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv2:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv4:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv6:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jva:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jvc:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jw0:
SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment
Method: single particle / : Walls AC, Park YJ, Tortorici MA, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-10462:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408
Method: single particle / : Srinivas H

EMDB-10463:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408 and bortezomib
Method: single particle / : Srinivas H

PDB-6tcz:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408
Method: single particle / : Srinivas H

PDB-6td5:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408 and bortezomib
Method: single particle / : Srinivas H

EMDB-11173:
Association of three complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab
Method: single particle / : Duyvesteyn HME, Zhou D, Zhao Y, Fry EE, Ren J, Stuart DI

PDB-6zdg:
Association of three complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab
Method: single particle / : Duyvesteyn HME, Zhou D, Zhao Y, Fry EE, Ren J, Stuart DI

EMDB-11218:
H11-H4 bound to Spike
Method: single particle / : Clare DK, Naismith JH

PDB-6zhd:
H11-H4 bound to Spike
Method: single particle / : Clare DK, Naismith JH, Weckener M, Vogirala VK

EMDB-11184:
Association of two complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab
Method: single particle / : Duyvesteyn HME, Zhou D, Zhao Y, Fry EE, Ren J, Stuart DI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more