[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: shankar & s)

EMDB-28663:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and foscarnet (pre-translocation state)
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-28664:
Herpes simplex virus 1 DNA polymerase holoenzyme bound to DNA template and primer, dNTP-free (editing mode)
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42887:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA in both open/closed conformations
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42888:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and DTTP in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42889:
Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42890:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and acyclovir triphosphate in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42891:
Herpes simplex virus 1 polymerase W781V mutant holoenzyme bound to DNA in editing conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8exx:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and foscarnet (pre-translocation state)
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1q:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA in both open/closed conformations
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1r:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and DTTP in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1s:
Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1t:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and acyclovir triphosphate in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-44765:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, dimer form
Method: single particle / : Ito F, Li Z, Chen XS

EMDB-44766:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, tetramer form
Method: single particle / : Ito F, Li Z, Chen XS

PDB-9bp9:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, dimer form
Method: single particle / : Ito F, Li Z, Chen XS

PDB-9bpa:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, tetramer form
Method: single particle / : Ito F, Li Z, Chen XS

EMDB-17948:
Cryo-EM map of Giardia intestinalis deoxyadenosine kinase
Method: single particle / : Ranjbarian F, Rafie K, Shankar K, Krakovka S, Svaerd S, Carlson LA, Hofer A

EMDB-36854:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Method: single particle / : Afsar M, Shukla A, Ramachandran R

EMDB-36860:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 1)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36868:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 2)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36883:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36885:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 1)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36886:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 2)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

PDB-8k3o:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Method: single particle / : Afsar M, Shukla A, Ramachandran R

PDB-8k4e:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-18615:
Cryo-electron tomogram of small unilamellar vesicles decorated with poliovirus protein 2C
Method: electron tomography / : Shankar K, Dahmane S, Carlson LA

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199
Method: single particle / : Binshtein E, Crowe JE

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

PDB-8ekd:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112
Method: single particle / : Binshtein E, Crowe JE

EMDB-16127:
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Method: single particle / : Dimitrova-Paternoga L, Paternoga H, Wilson DN

PDB-8bn3:
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Method: single particle / : Dimitrova-Paternoga L, Paternoga H, Wilson DN

EMDB-34551:
Cryo-EM structure of HACE1 monomer
Method: single particle / : Singh S, Machida S, Tulsian NK, Choong YK, Ng J, Shanker S, Yaochen LD, Shi J, Sivaraman J

EMDB-34586:
Cryo-EM structure of HACE1 dimer
Method: single particle / : Singh S, Machida S, Tulsian NK, Choong YK, Ng J, Shanker S, Yaochen LD, Shi J, Sivaraman J

PDB-8h8x:
Cryo-EM structure of HACE1 monomer
Method: single particle / : Singh S, Machida S, Tulsian NK, Choong YK, Ng J, Shanker S, Yaochen LD, Shi J, Sivaraman J

PDB-8hae:
Cryo-EM structure of HACE1 dimer
Method: single particle / : Singh S, Machida S, Tulsian NK, Choong YK, Ng J, Shanker S, Yaochen LD, Shi J, Sivaraman J, Machida S

EMDB-13682:
In situ subtomogram average of autophagosome-associated protein filament
Method: subtomogram averaging / : Dahmane S, Morado DR, Carlson LA

EMDB-15390:
Subtomogram average of empty poliovirus particles
Method: subtomogram averaging / : Dahmane S, Carlson LA

EMDB-15391:
Subtomogram average of RNA-loaded poliovirus
Method: subtomogram averaging / : Dahmane S, Carlson LA

EMDB-15392:
Subtomogram average of membrane-tethered poliovirus
Method: subtomogram averaging / : Dahmane S, Carlson LA

EMDB-25209:
Structure of human SARS-CoV-2 neutralizing antibody C1C-A3 Fab
Method: single particle / : Pan J, Abraham J

EMDB-25210:
Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region)
Method: single particle / : Pan J, Abraham J

PDB-7sn2:
Structure of human SARS-CoV-2 neutralizing antibody C1C-A3 Fab
Method: single particle / : Pan J, Abraham J, Yang P, Shankar S

PDB-7sn3:
Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region)
Method: single particle / : Pan J, Abraham J, Shankar S

EMDB-11951:
Context-specific inhibition of eukaryotic translation by macrolide antibiotics
Method: single particle / : Koller TO, Wilson DN

PDB-7azy:
Context-specific inhibition of eukaryotic translation by macrolide antibiotics
Method: single particle / : Koller TO, Wilson DN

PDB-7l7g:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens (updated model of PDB ID: 6CAJ)
Method: single particle / : Tsai JC, Miller-Vedam LE, Anand A, Jaishankar P, Nguyen HC, Wang L, Renslo AR, Frost A, Walter P

EMDB-7442:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens
Method: single particle / : Tsai JC, Miller-Vedam LE

EMDB-7443:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens
Method: single particle / : Tsai JC, Miller-Vedam LE, Anand AA, Nguyen HC, Frost A, Walter P

EMDB-7444:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens
Method: single particle / : Tsai JC, Miller-Vedam LE, Anand AA, Jaishankar P, Nguyen HC, Renslo AR, Frost A, Walter P

PDB-6caj:
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens
Method: single particle / : Tsai JC, Miller-Vedam LE, Anand AA, Jaishankar P, Nguyen HC, Renslo AR, Frost A, Walter P

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more