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Showing 1 - 50 of 56 items for (author: sekine & si)

EMDB-39211:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39221:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39226:
Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-39227:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-39119:
Cryo-EM structure of human nucleosome core particle composed of the Widom 601 DNA sequence
Method: single particle / : Kimura T, Hirai S, Kujirai T, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-39120:
Cryo-EM structure of the human nucleosome containing the H3.1 E97K mutant
Method: single particle / : Kimura T, Hirai S, Kujirai T, Ogasawara M, Takizawa Y, Kurumizaka H

EMDB-34022:
Cryo-EM structure of human topoisomerase II beta in complex with DNA and etoposide
Method: single particle / : Naganuma M, Ehara H, Kim D, Nakagawa R, Cong A, Bu H, Jeong J, Jang J, Schellenberg MJ, Bunch H, Sekine S

EMDB-36251:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36252:
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36253:
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-37848:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(0) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-37070:
Cryo-EM structure of the human nucleosome containing H3.8
Method: single particle / : Hirai H, Kujirai T, Takizawa Y, Kurumizaka H

EMDB-36389:
Cryo-EM structure of the human nucleosome with scFv
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36390:
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36391:
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36393:
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36744:
Thermus thermophilus Rho-engaged RNAP elongation complex; EC part
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-36745:
Thermus thermophilus Rho-engaged RNAP elongation complex; Rho part
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-34400:
Cryo-EM structure of the NS5-SLA complex
Method: single particle / : Osawa T, Ehara H, Sekine S

EMDB-34401:
Cryo-EM structure of the NS5-NS3-SLA complex
Method: single particle / : Osawa T, Ehara H, Sekine S

EMDB-34402:
Cryo-EM structure of the the NS5-NS3 RNA-elongation complex
Method: single particle / : Osawa T, Ehara H, Sekine S

EMDB-32407:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
Method: single particle / : Osumi K, Kujirai T

EMDB-32408:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T

EMDB-32409:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
Method: single particle / : Osumi K, Kujirai T

EMDB-34685:
RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Kinoshita C, Saotome M, Kagawa W, Sekine S, Takizawa Y, Kurumizaka H

EMDB-34996:
Thermus thermophilus RNA polymerase elongation complex
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-34997:
Thermus thermophilus RNA polymerase coreenzyme
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-34999:
Thermus thermophilus transcription termination factor Rho bound with ADP-BeF3
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-35000:
Thermus thermophilus RNA polymerase bound with an inverted Rho hexamer
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-35004:
Thermus thermophilus Rho-engaged RNAP elongation complex (composite structure)
Method: single particle / : Murayama Y, Ehara H, Sekine S

EMDB-32094:
Cryo-EM structure of H2A-ubiquitinated nucleosome
Method: single particle / : Ohtomo H, Ito S, McKenzie NJ, Uckelmann M, Wakamori M, Ehara H, Tsunaka Y, Shibata M, Sekine S, Umehara T, Davidovich C, Koseki H, Nishimura Y

EMDB-34415:
RNA polymerase II transcribing a chromatosome (type I)
Method: single particle / : Hirano R, Ehara H, Tomoya K, Takizawa Y, Sekine S, Kurumizaka H

EMDB-34416:
RNA polymerase II transcribing a chromatosome (type II)
Method: single particle / : Hirano R, Ehara H, Tomoya K, Takizawa Y, Sekine S, Kurumizaka H

EMDB-33441:
RNA polymerase II elongation complex transcribing a nucleosome (EC49B)
Method: single particle / : Ehara H, Kujirai T, Shirouzu M, Kurumizaka H, Sekine S

EMDB-33450:
RNA polymerase II elongation complex transcribing a nucleosome (EC58hex)
Method: single particle / : Ehara H, Kujirai T, Shirouzu M, Kurumizaka H, Sekine S

EMDB-33313:
RNA polymerase II elongation complex containing Spt4/5, Elf1, Spt6, Spn1 and Paf1C
Method: single particle / : Ehara H, Kujirai T, Shirouzu M, Kurumizaka H, Sekine S

EMDB-33424:
RNA polymerase II elongation complex transcribing a nucleosome (EC42)
Method: single particle / : Ehara H, Kujirai T, Shirouzu M, Kurumizaka H, Sekine S

EMDB-33436:
RNA polymerase II elongation complex transcribing a nucleosome (EC49)
Method: single particle / : Ehara H, Kujirai T, Shirouzu M, Kurumizaka H, Sekine S

EMDB-33437:
RNA polymerase II elongation complex transcribing a nucleosome (EC115)
Method: single particle / : Ehara H, Kujirai T, Shirouzu M, Kurumizaka H, Sekine S

EMDB-33447:
RNA polymerase II elongation complex transcribing a nucleosome (EC58oct)
Method: single particle / : Ehara H, Kujirai T, Shirouzu M, Kurumizaka H, Sekine S

EMDB-32591:
Cryo-EM structure of the nucleosome containing Komagataella pastoris histones
Method: single particle / : Fukushima Y, Hatazawa S, Hirai S, Kujirai T, Takizawa Y, Kurumizaka H

EMDB-0671:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-5) of the nucleosome
Method: single particle / : Ehara H, Kujirai T

EMDB-0672:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1A)
Method: single particle / : Ehara H, Kujirai T

EMDB-0673:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1B)
Method: single particle / : Ehara H, Kujirai T

EMDB-0674:
RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Ehara H, Kujirai T

EMDB-0675:
RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome (tilted conformation)
Method: single particle / : Ehara H, Kujirai T

EMDB-0676:
RNA polymerase II elongation complex bound with Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome, weak Elf1 (+1 position)
Method: single particle / : Ehara H, Kujirai T

EMDB-9713:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome
Method: single particle / : Ehara H, Kujirai T

EMDB-6980:
RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA
Method: single particle / : Kujirai T, Ehara H, Fujino Y, Shirouzu M, Sekine S, Kurumizaka H

EMDB-6981:
RNA polymerase II elongation complex stalled at SHL(-6) of the nucleosome
Method: single particle / : Kujirai T, Ehara H, Fujino Y, Shirouzu M, Sekine S, Kurumizaka H

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