[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 133 items for (author: s & fraser & c)

EMDB-75605:
Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)
Method: single particle / : Raskar T, Badran A, Fraser J

EMDB-75634:
Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
Method: single particle / : Raskar T, Badran A, Fraser J

EMDB-75668:
Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
Method: single particle / : Raskar T

EMDB-75676:
Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
Method: single particle / : Raskar T

PDB-11bq:
Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)
Method: single particle / : Raskar T, Badran A, Fraser J

PDB-11dg:
Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)
Method: single particle / : Raskar T, Badran A, Fraser J

PDB-11fv:
Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)
Method: single particle / : Raskar T

PDB-11gg:
Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
Method: single particle / : Raskar T

EMDB-71718:
Locally-refined structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-71719:
Structure of alpha2a adrenergic receptor in complex with Go heterotrimer, scFv16, and N-(5-methylnaphthalen-1-yl)pyridin-4-amine (compound 4905)
Method: single particle / : Srinivasan K, Xu X, Mailhot O, Manglik A, Shoichet B

EMDB-70841:
Human glutamine synthetase filament under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70842:
Human glutamine synthetase filament bound to ATP
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70843:
Human glutamine synthetase decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70844:
Human glutamine synthetase R298A decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-70845:
Human glutamine synthetase filament apo
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otm:
Human glutamine synthetase filament under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otn:
Human glutamine synthetase filament bound to ATP
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9oto:
Human glutamine synthetase decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otp:
Human glutamine synthetase R298A decamer under turnover conditions
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

PDB-9otq:
Human glutamine synthetase filament apo
Method: single particle / : Greene ER, Muniz RS, Kollman JM, Fraser JS

EMDB-45757:
Human 39S mitoribosome in complex with antibiotic Linezolid
Method: single particle / : Raskar T, Bibel B, Galonic Fujimori D, Fraser J

PDB-9cn3:
Human 39S mitoribosome in complex with antibiotic Linezolid
Method: single particle / : Raskar T, Bibel B, Galonic Fujimori D, Fraser J

EMDB-44090:
HWS19 strain WT mycobacterial ribosome
Method: single particle / : Young ID, Chen Y, Javid B, Fraser JS

EMDB-44091:
HWS19 strain gidB mutant mycobacterial ribosome
Method: single particle / : Chen Y, Young ID, Fraser JS, Javid B

EMDB-44092:
WT strain WT mycobacterial ribosome
Method: single particle / : Chen Y, Young ID, Fraser JS, Javid B

EMDB-44097:
WT strain gidB mutant mycobacterial ribosome
Method: single particle / : Young ID, Chen Y, Javid B, Fraser JS

PDB-9b1w:
HWS19 strain WT mycobacterial ribosome
Method: single particle / : Young ID, Chen Y, Javid B, Fraser JS

PDB-9b1x:
HWS19 strain gidB mutant mycobacterial ribosome
Method: single particle / : Chen Y, Young ID, Fraser JS, Javid B

PDB-9b1y:
WT strain WT mycobacterial ribosome
Method: single particle / : Chen Y, Young ID, Fraser JS, Javid B

PDB-9b24:
WT strain gidB mutant mycobacterial ribosome
Method: single particle / : Young ID, Chen Y, Javid B, Fraser JS

EMDB-19181:
Beta-galactosidase (LacZ) purified from E. coli.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-19182:
Beta-galactosidase (LacZ) in complex with glycosyrin from Pseudomonas syringae.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-19183:
Beta-galactosidase (LacZ) in complex with synthetic glycosyrin.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri6:
Beta-galactosidase (LacZ) purified from E. coli.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri7:
Beta-galactosidase (LacZ) in complex with glycosyrin from Pseudomonas syringae.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri8:
Beta-galactosidase (LacZ) in complex with synthetic glycosyrin.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-44641:
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Albacete-Albacete L, Ramakrishnan V, S Fraser C

EMDB-44671:
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Yifei D, Albacete-Albacete L, Ramakrishnan V, S Fraser C

PDB-9bkd:
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Albacete-Albacete L, Ramakrishnan V, SFraser C

PDB-9bln:
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Yifei D, Albacete-Albacete L, Ramakrishnan V, S Fraser C

EMDB-40480:
TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules
Method: single particle / : Anderson JR, Gui M, Brown A

PDB-8sh7:
TUBB4B and TUBA1A Heterodimer from Human Respiratory Doublet Microtubules
Method: single particle / : Anderson JR, Gui M, Brown A

EMDB-17297:
Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Fraser CS, Ramakrishnan V

PDB-8oz0:
Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Fraser CS, Ramakrishnan V

EMDB-41617:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M, Sun M

PDB-8tu6:
CryoEM structure of PI3Kalpha
Method: single particle / : Valverde R, Shi H, Holliday M

EMDB-27867:
E. coli 50S ribosome bound to D-linker solithromycin conjugate
Method: single particle / : Pellegrino J, Lee DJ, Fraser JS, Seiple IB

EMDB-27868:
E. coli 50S ribosome bound to L-linker solithromycin conjugate
Method: single particle / : Pellegrino J, Lee DJ, Fraser JS, Seiple IB

EMDB-27869:
E. coli 50S ribosome bound to solithromycin and VM1
Method: single particle / : Pellegrino J, Lee DJ, Fraser JS, Seiple IB

EMDB-16330:
Botulinum neurotoxin serotype X in complex with NTNH/X
Method: single particle / : Martinez-Carranza M, Skerlova J, Stenmark P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more