[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 10,879 items for (author: ren & g)

EMDB-80405:
Bacteroides thetaiotaomicron CcsBA mutant W703C
Method: single particle / : Seifermann J, Ilcu L, Moog C, Zhang L, Einsle O

PDB-25vk:
Bacteroides thetaiotaomicron CcsBA mutant W703C
Method: single particle / : Seifermann J, Ilcu L, Moog C, Zhang L, Einsle O

EMDB-77750:
1D6 Fab/NA25:Ab complex
Method: single particle / : Du J, Pallesen J

EMDB-73982:
Human GGPPS in the Open Hexamer Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

PDB-9zbc:
Human GGPPS in the Open Hexamer Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

EMDB-73980:
Human GGPPS Bound to Selective Inhibitor CML-07-119 in theShielded Binding Site Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

PDB-9zba:
Human GGPPS Bound to Selective Inhibitor CML-07-119 in theShielded Binding Site Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

EMDB-73983:
Human GGPPS in the Closed Hexamer Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

PDB-9zbd:
Human GGPPS in the Closed Hexamer Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

EMDB-73979:
Cryo-EM Structure of Human GGPPS Bound to Selective Inhibitor CML-07-119
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

PDB-9zb9:
Cryo-EM Structure of Human GGPPS Bound to Selective Inhibitor CML-07-119
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

EMDB-73981:
Human GGPPS Bound to Selective Inhibitor CML-07-119 in theExposed Binding Site Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

PDB-9zbb:
Human GGPPS Bound to Selective Inhibitor CML-07-119 in the Exposed Binding Site Conformation
Method: single particle / : Ferens FG, Tsantrizos YS, Lemieux MJ

EMDB-53939:
Structure of complement C3 in an extended conformation
Method: single particle / : Whittaker JJ, Eikrem D, Whittaker J, Seisenbaeva G, Nilsson-Ekdahl K, Nilsson B, Sandgren M, Kessler VG

PDB-9rf3:
Structure of complement C3 in an extended conformation
Method: single particle / : Whittaker JJ, Eikrem D, Whittaker J, Seisenbaeva G, Nilsson-Ekdahl K, Nilsson B, Sandgren M, Kessler VG

EMDB-66968:
The focused structure of the N-terminal lobe of the human UBR4
Method: single particle / : Hu Z, Yan R

EMDB-67233:
The focused structure of the C-terminal lobe of the human UBR4-KCMF1-Calmodulin complex
Method: single particle / : Hu Z, Yan R

PDB-9xkl:
The focused structure of the N-terminal lobe of the human UBR4
Method: single particle / : Hu Z, Yan R

PDB-9xti:
The focused structure of the C-terminal lobe of the human UBR4-KCMF1-Calmodulin complex
Method: single particle / : Hu Z, Yan R

EMDB-77368:
HIV-1 reverse transcriptase in complex with DNAddG Aptamer and unincorporated ISL-triphosphate
Method: single particle / : Hecksel CW, Walker SN, Klein DJ

EMDB-77389:
HIV-1 reverse transcriptase in complex with DNA Aptamer and Incorporated dATP
Method: single particle / : Hecksel CW, Walker SN, Klein DJ

EMDB-77393:
HIV-1 reverse transcriptase (F227C) in complex with DNAddG Aptamer and unincorporated ISL-triphosphate
Method: single particle / : Hecksel CW, Walker SN, Klein DJ

EMDB-77401:
HIV-1 reverse transcriptase (F227C) in complex with DNA Aptamer and Incorporated dATP
Method: single particle / : Hecksel CW, Walker SN, Klein DJ

EMDB-77403:
HIV-1 reverse transcriptase (F227C) in complex with DNAddG Aptamer
Method: single particle / : Hecksel CW, Walker SN, Klein DJ

EMDB-58507:
Discodermolide stabilised 14-protofilament microtubule C1 reconstruction
Method: single particle / : Gravett MSC, Howes SC, Pelster Jose A

EMDB-58509:
Discodermolide stabilised 13-protofilament microtubule C1 reconstruction
Method: single particle / : Gravett MSC, Howes SC, Pelster Jose A

EMDB-76291:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

PDB-12bp:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

EMDB-67245:
The focused structure of the propeller domain of the human UBR4
Method: single particle / : Hu Z, Yan R

EMDB-72217:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'mid' conformation)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-72218:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk 'in' conformation)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-72219:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-72220:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation and missing uL1 and tRNA)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-72256:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (base map)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-72258:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (CP local map)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-72272:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 Stalk domain 'in' conformation)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-72273:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 Stalk domain 'mid' conformation)
Method: single particle / : Findlay JL, Lawrence CM, Kanik M, Franklin MJ, Gauvin CC

EMDB-72274:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L7/L12 Stalk local map)
Method: single particle / : Findlay JL, Lawrence CM, Kanik M, Franklin MJ, Gauvin CC

EMDB-72275:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 Stalk domain 'out' conformation)
Method: single particle / : Findlay JL, Lawrence CM, Kanik M, Franklin MJ, Gauvin CC

EMDB-72276:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 Stalk domain 'out' conformation and missing uL1 and tRNA)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

PDB-9q40:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'mid' conformation)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

PDB-9q42:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk 'in' conformation)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

PDB-9q43:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

PDB-9q44:
Pseudomonas aeruginosa 50S ribosome bound to RsfS (L1 stalk in 'out' conformation and missing uL1 and tRNA)
Method: single particle / : Findlay JL, Kanik M, Gauvin CC, Franklin MJ, Lawrence CM

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more