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Showing 1 - 50 of 1,797 items for (author: ray & d)

EMDB-71880:
NorA in outward-open conformation bound to inhibitor IMP2380
Method: single particle / : Suwatthee T, Gray JL, Ledger EVK, Wang D, Edwards A, Tate EW, Traaseth NJ

PDB-9pv0:
NorA in outward-open conformation bound to inhibitor IMP2380
Method: single particle / : Suwatthee T, Gray JL, Ledger EVK, Wang D, Edwards A, Tate EW, Traaseth NJ

EMDB-77477:
apo-bmCCAN consensus refinement
Method: single particle / : Yatskevich S, Ciferri C

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-57240:
Cryo-EM structure of Bacillus subtilis DnaB
Method: single particle / : Campoy RR, Guyet A, Pelliciari S, Murray H, Ilangovan A

PDB-29km:
Cryo-EM structure of Bacillus subtilis DnaB
Method: single particle / : Campoy RR, Guyet A, Pelliciari S, Murray H, Ilangovan A

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-70561:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70567:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

PDB-9oke:
Structure of the Bombyx mori bmCENP-HIKM-LN-T-OP complex without the CS module
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okk:
Bombyx mori bmCENP-LN-HIKM sub-complex structure
Method: single particle / : Yatskevich S, Ciferri C

EMDB-55048:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55049:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's HMP extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-55050:
CryoEM structure of NADH:quinone oxidoreductases YjlCD fiber's N-terminal extremity from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

PDB-9snk:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-68793:
Vpb4Aa2 pore complex in C1 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

EMDB-71647:
Vpb4Aa2 pore complex in C7 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

PDB-22zo:
Single full-length subunit of the Vpb4Aa2 pore complex
Method: single particle / : Wirawan R, Lupton CJ, Venugopal H, Berry C, Dunstone MA, Spicer BA

PDB-9phf:
Vpb4Aa2 pore complex in C7 symmetry
Method: single particle / : Wirawan R, Spicer BA, Lupton CJ, Venugopal H, Berry C, Dunstone MA

EMDB-70890:
C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Weidle C, Carr KD, Alexis C, Borst AJ

EMDB-70558:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70560:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

EMDB-70568:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okb:
Structure of the dimeric Bombyx mori CCAN bound to DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okd:
Structure of the monomeric Bombyx mori CCAN bound to linear DNA
Method: single particle / : Yatskevich S, Ciferri C

PDB-9okl:
Structure of the Bombyx mori apo-bmCCAN
Method: single particle / : Yatskevich S, Ciferri C

EMDB-65772:
Cryo-EM structure of Aspergillus fumigatus ErdS tetramer
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65773:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem docked at the AspRS active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-65774:
Cryo-EM structure of Aspergillus fumigatus ErdS dimer with tRNA(Asp) acceptor stem in an intermediate position toward the ATT active site
Method: single particle / : Murayama H, Nishimura M, Kise Y, Itoh Y, Nureki O

EMDB-55593:
Chlorophyll f-containing dimeric far-red Photosystem II from Chroococcidiopsis thermalis PCC 7203
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

EMDB-55594:
Chlorophyll f-containing monomeric far-red Photosystem II from Calothrix sp. NIES-3974
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

PDB-9t5t:
Chlorophyll f-containing dimeric far-red Photosystem II from Chroococcidiopsis thermalis PCC 7203
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

PDB-9t5u:
Chlorophyll f-containing monomeric far-red Photosystem II from Calothrix sp. NIES-3974
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

EMDB-56477:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

EMDB-56479:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

PDB-9tzw:
SARM1 TIR with BEXi adduct 6
Method: single particle / : Sader KS, Oliveria TM

PDB-9tzy:
SARM1 TIR with BEXi adduct 17
Method: single particle / : Sader K

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-76979:
Cryo-ET of mitochondrial membrane in direct interaction with alpha-synuclein exhibiting membrane morphological distortion
Method: electron tomography / : Jaber N, Dai W

EMDB-76980:
Supplemental: irregularly shaped mitochondria interacting with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-76981:
Supplemental: alpha-synuclein oligomers on the surface of a mitochondrial membrane
Method: electron tomography / : Jaber N, Dai W

EMDB-76983:
Supplemental: mitochondria not associated with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-54255:
Mammalian AP3 complex on tubular membranes (AP3 centered)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

EMDB-54256:
Mammalian AP3 complex on tubular membranes (ARF1 centered Beta3-ARF1 dimer-Beta3 interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

EMDB-54257:
Mammalian AP3 complex on tubular membranes (ARF1 centered Beta3-ARF1 dimer-Delta interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

EMDB-54258:
Mammalian AP3 complex on tubular membranes (ARF1 centered Delta-ARF1 dimer-Delta3 interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

PDB-9rtw:
Mammalian AP3 complex on tubular membranes (AP3 centered)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

PDB-9rtx:
Mammalian AP3 complex on tubular membranes (ARF1 centered Beta3-ARF1 dimer-Beta3 interface)
Method: subtomogram averaging / : Kaufman JGG, Tagiltsev G, Briggs JAG, Owen DJ

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