[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 76 items for (author: osman & r)

PDB-9snk:
CryoEM structure of NADH:quinone oxidoreductases YjlCD from Bacillus subtilis
Method: single particle / : Osman R, Cherrier MV, Nicolet Y, Juyoux P, Schoehn G, Seduk F, Garcia PS, Bizien-Jaglin L, Botte CY, Kosta A, Lebrun R, Mate MJ, Pierrel F, Yamaryo-Botte Y, Walburger A, Magalon A

EMDB-47199:
Thermus thermophilus MreC-MreD complex with an internal MreD BRIL fusion and an anti-BRIL Fab.
Method: single particle / : Gilman MSA, Kruse AC

EMDB-47200:
Thermus thermophilus MreC-MreD complex with a C-terminal MreD BRIL fusion and an anti-BRIL Fab.
Method: single particle / : Gilman MSA, Kruse AC

PDB-9dvb:
Thermus thermophilus MreC-MreD complex with an internal MreD BRIL fusion and an anti-BRIL Fab
Method: single particle / : Gilman MSA, Kruse AC

PDB-9dvc:
Thermus thermophilus MreC-MreD complex with a C-terminal MreD BRIL fusion and an anti-BRIL Fab
Method: single particle / : Gilman MSA, Kruse AC

EMDB-19943:
Archaellum filament from the Halobacterium salinarum deltaAgl26 strain
Method: helical / : Grosmann-Haham I, Shahar A

PDB-9esm:
Archaellum filament from the Halobacterium salinarum deltaAgl26 strain
Method: helical / : Grosmann-Haham I, Shahar A

EMDB-40976:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40977:
Cryo-EM structure of mink variant Y453F trimeric spike protein
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40978:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40979:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at upRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-40980:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at downRBD conformation.
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

EMDB-41143:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Liang B

PDB-8t20:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to two mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t21:
Cryo-EM structure of mink variant Y453F trimeric spike protein
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t22:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors at downRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t23:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at upRBD conformation
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8t25:
Cryo-EM structure of the RBD-ACE2 interface of the SARS-CoV-2 trimeric spike protein bound to ACE2 receptor after local refinement at downRBD conformation.
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Zhou B, Liang B

PDB-8taz:
Cryo-EM structure of mink variant Y453F trimeric spike protein bound to one mink ACE2 receptors
Method: single particle / : Ahn HM, Calderon B, Fan X, Gao Y, Horgan N, Liang B

EMDB-41081:
Cryo-EM structure of human Anion Exchanger 1 bound to Dipyridamole
Method: single particle / : Capper MJ, Zilberg G, Mathiharan YK, Yang S, Stone AC, Wacker D

EMDB-41082:
Cryo-EM structure of human Anion Exchanger 1 bound to 4,4'-Diisothiocyanatostilbene-2,2'-Disulfonic Acid (DIDS)
Method: single particle / : Capper MJ, Zilberg G, Mathiharan YK, Yang S, Stone AC, Wacker D

PDB-8t6u:
Cryo-EM structure of human Anion Exchanger 1 bound to Dipyridamole
Method: single particle / : Capper MJ, Zilberg G, Mathiharan YK, Yang S, Stone AC, Wacker D

PDB-8t6v:
Cryo-EM structure of human Anion Exchanger 1 bound to 4,4'-Diisothiocyanatostilbene-2,2'-Disulfonic Acid (DIDS)
Method: single particle / : Capper MJ, Zilberg G, Mathiharan YK, Yang S, Stone AC, Wacker D

EMDB-26165:
Cryo-EM structure of human Anion Exchanger 1
Method: single particle / : Capper MJ, Mathiharan YK

EMDB-26167:
Cryo-EM structure of human Anion Exchanger 1 bound to 4,4'-Diisothiocyanatodihydrostilbene-2,2'-Disulfonic Acid (H2DIDS)
Method: single particle / : Capper MJ, Mathiharan YK

EMDB-26168:
Cryo-EM structure of human Anion Exchanger 1 bound to Bicarbonate
Method: single particle / : Capper MJ, Mathiharan YK

EMDB-26169:
Cryo-EM structure of human Anion Exchanger 1 bound to Niflumic Acid
Method: single particle / : Capper MJ, Mathiharan YK

EMDB-26171:
Cryo-EM structure of human Anion Exchanger 1 modified with Diethyl Pyrocarbonate (DEPC)
Method: single particle / : Capper MJ, Mathiharan YK

PDB-7ty4:
Cryo-EM structure of human Anion Exchanger 1
Method: single particle / : Capper MJ, Mathiharan YK, Yang S, Stone AC, Wacker D

PDB-7ty6:
Cryo-EM structure of human Anion Exchanger 1 bound to 4,4'-Diisothiocyanatodihydrostilbene-2,2'-Disulfonic Acid (H2DIDS)
Method: single particle / : Capper MJ, Mathiharan YK, Yang S, Stone AC, Wacker D

PDB-7ty7:
Cryo-EM structure of human Anion Exchanger 1 bound to Bicarbonate
Method: single particle / : Capper MJ, Mathiharan YK, Yang S, Stone AC, Wacker D

PDB-7ty8:
Cryo-EM structure of human Anion Exchanger 1 bound to Niflumic Acid
Method: single particle / : Capper MJ, Mathiharan YK, Yang S, Stone AC, Wacker D

PDB-7tya:
Cryo-EM structure of human Anion Exchanger 1 modified with Diethyl Pyrocarbonate (DEPC)
Method: single particle / : Capper MJ, Mathiharan YK, Yang S, Stone AC, Wacker D

EMDB-15217:
PAPP-A dimer in complex with a dimer of the inhibitor STC2
Method: single particle / : Kobbero SD, Oxvig C, Gajhede M, Boesen T

EMDB-15219:
PAPP-A dimer in complex with endogenous STC2 inhibitor.
Method: single particle / : Kobbero SD, Oxvig C, Gajhede M, Boesen T

EMDB-15220:
Partial dimer complex of PAPP-A and its inhibitor STC2
Method: single particle / : Kobbero SD, Gajhede M, Mirza OA, Boesen T, Oxvig C

EMDB-15221:
PAPP-A dimer in complex with its inhibitor STC2 (CASP target)
Method: single particle / : Kobbero SD, Gajhede M, Mirza OA, Boesen T, Oxvig C

PDB-8a7d:
Partial dimer complex of PAPP-A and its inhibitor STC2
Method: single particle / : Kobbero SD, Gajhede M, Mirza OA, Boesen T, Oxvig C

PDB-8a7e:
PAPP-A dimer in complex with its inhibitor STC2
Method: single particle / : Kobbero SD, Gajhede M, Mirza OA, Boesen T, Oxvig C

EMDB-23207:
Structure and function at the lipid-protein interface of a pentameric ligand-gated ion channel
Method: single particle / : Grosman C, Kumar P

EMDB-23208:
Unliganded ELIC in POPC-only nanodiscs at 3.3-Angstrom resolution
Method: single particle / : Kumar P, Grosman C

PDB-7l6q:
Unliganded ELIC in styrene-maleic-acid nanodiscs at 2.5-Angstrom resolution
Method: single particle / : Grosman C, Kumar P

PDB-7l6u:
Unliganded ELIC in POPC-only nanodiscs at 3.3-Angstrom resolution
Method: single particle / : Kumar P, Grosman C

EMDB-4921:
Density map of GluA2cryst with agonist AMPA, Class 1, compact
Method: single particle / : Krintel C, Dorosz J, Larsen AH, Thorsen TS, Venskutonyte R, Mirza O, Gajhede M, Boesen T, Kastrup JS

EMDB-4875:
Density map of GluA2cryst in the apo state
Method: single particle / : Krintel C, Dorosz J, Larsen AH, Thorsen TS, Venskutonyte R, Mirza O, Gajhede M, Boesen T, Kastrup JS

EMDB-4920:
Density map of GluA2cryst with negative allosteric modulator GYKI53655 and competitive antagonist ZK200775
Method: single particle / : Krintel C, Dorosz J, Larsen AH, Thorsen TS, Venskutonyte R, Mirza O, Gajhede M, Boesen T, Kastrup JS

EMDB-4922:
Density map of GluA2cryst with allosteric modulator GYKI53655 and agonist AMPA, Class 2, loose
Method: single particle / : Krintel C, Dorosz J, Larsen AH, Thorsen TS, Venskutonyte R, Mirza O, Gajhede M, Boesen T, Kastrup JS

EMDB-4923:
Density map of GluA2cryst with negative allosteric modulator GYKI53655
Method: single particle / : Krintel C, Dorosz J, Larsen AH, Thorsen TS, Venskutonyte R, Mirza O, Gajhede M, Boesen T, Kastrup JS

EMDB-4924:
Density map of GluA2cryst with agonist AMPA, Class 2, loose
Method: single particle / : Krintel C, Dorosz J, Larsen AH, Thorsen TS, Venskutonyte R, Mirza O, Gajhede M, Boesen T, Kastrup JS

EMDB-4925:
Density map of GluA2cryst with allosteric modulator GYKI53655 and agonist AMPA, Class 1, compact
Method: single particle / : Krintel C, Dorosz J, Larsen AH, Thorsen TS, Venskutonyte R, Mirza O, Gajhede M, Boesen T, Kastrup JS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more