[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 102 items for (author: oguchi & y)

EMDB-63714:
Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Minamino A, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

EMDB-64946:
Map including micelle density from the photosynthetic LH1-RC complex of the halophilic nonsulfur purple bacterium Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Inada K, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

PDB-9m8m:
Structure of photosynthetic LH1-RC complex the Halophilic Nonsulfur Purple Bacterium, Rhodothalassium salexigens
Method: single particle / : Tani K, Kanno R, Inami M, Ooya T, Matsushita R, Minamino A, Takenaka S, Takaichi S, Purba ER, Hall M, Mochizuki T, Yu LJ, Mizoguchi A, Humbel BM, Madigan MT, Kimura Y, Wang-Otomo ZY

EMDB-39835:
Photosynthetic LH2-LH1 complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Nagashima KVP, Kanno R, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8z81:
Photosynthetic LH2-LH1 complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Nagashima KVP, Kanno R, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-39836:
Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-39837:
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8z82:
Photosynthetic LH1-RC-HiPIP complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8z83:
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Method: single particle / : Tani K, Kanno R, Nagashima KVP, Hiwatashi N, Kawakami M, Nakata K, Nagashima S, Inoue K, Takaichi S, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-61095:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

PDB-9j2f:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

EMDB-38740:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

EMDB-38741:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

EMDB-60404:
Cryo-EM structure focused on the receptor of the ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

PDB-8xwp:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

PDB-8xwq:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

PDB-8zrt:
Cryo-EM structure focused on the receptor of the ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

EMDB-37465:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-37466:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8wdu:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by sucrose density
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

PDB-8wdv:
Photosynthetic LH1-RC complex from the purple sulfur bacterium Allochromatium vinosum purified by Ca2+-DEAE
Method: single particle / : Tani K, Kanno R, Harada A, Kobayashi A, Minamino A, Nakamura N, Ji XC, Purba ER, Hall M, Yu LJ, Madigan MT, Mizoguchi A, Iwasaki K, Humbel BM, Kimura Y, Wang-Otomo ZY

EMDB-36905:
SARS-CoV-2 BA.1 RBD with UT28-RD
Method: single particle / : Chen L, Kita S, Anraku Y, Maenaka K

EMDB-36906:
SARS-CoV-2 BA.1 spike with UT28-RD
Method: single particle / : Chen L, Kita S, Anraku Y, Maenaka K

PDB-8k5g:
Structure of the SARS-CoV-2 BA.1 RBD with UT28-RD
Method: single particle / : Chen L, Kita S, Anraku Y, Maenaka K

PDB-8k5h:
Structure of the SARS-CoV-2 BA.1 spike with UT28-RD
Method: single particle / : Chen L, Kita S, Anraku Y, Maenaka K

EMDB-33931:
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Method: single particle / : Tani K, Kanno R, Ji XC, Satoh I, Kobayashi Y, Nagashima KVP, Hall M, Yu LJ, Kimura Y, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY

PDB-7yml:
Structure of photosynthetic LH1-RC super-complex of Rhodobacter capsulatus
Method: single particle / : Tani K, Kanno R, Ji XC, Satoh I, Kobayashi Y, Nagashima KVP, Hall M, Yu LJ, Kimura Y, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY

EMDB-33501:
Structure of photosynthetic LH1-RC super-complex of Rhodopila globiformis
Method: single particle / : Tani K, Kanno R, Kurosawa K, Takaichi S, Nagashima KVP, Hall M, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

PDB-7xxf:
Structure of photosynthetic LH1-RC super-complex of Rhodopila globiformis
Method: single particle / : Tani K, Kanno R, Kurosawa K, Takaichi S, Nagashima KVP, Hall M, Yu LJ, Kimura Y, Madigan MT, Mizoguchi A, Humbel BM, Wang-Otomo ZY

EMDB-13619:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (composite map)
Method: single particle / : Saleh A, Noguchi Y

EMDB-13620:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (composite map)
Method: single particle / : Saleh A, Noguchi Y

EMDB-13621:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (B1 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13622:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (B2 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13623:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (B3 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13624:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state III (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13629:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (composite map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13631:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (B1 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13635:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (B2 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13640:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state II (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13644:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ATPgS, state I (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13645:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (B1 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13646:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (B2 map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13647:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, state I (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13648:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state (3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13649:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state A (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13650:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state B (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13651:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state C (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13652:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state D (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13653:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state E (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

EMDB-13655:
Structure of MCM2-7 DH complexed with Cdc7-Dbf4 in the presence of ADP:BeF3, swiveled state F (binned 3D auto-refined map)
Method: single particle / : Saleh A, Noguchi Y, Aramayo R, Ivanova ME, Speck C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more