[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 51 items for (author: mengqiu & j)

PDB-10eh:
De novo assembled CBF3-CEN complex
Method: single particle / : Mengqiu J, Sue B

EMDB-26563:
Stx2a and DARPin complex
Method: single particle / : Jiang M, Zhang J

EMDB-26565:
Apo state Shiga toxin 2
Method: single particle / : Jiang M, Zhang J

PDB-7ujj:
Stx2a and DARPin complex
Method: single particle / : Jiang M, Zhang J

EMDB-30851:
Voltage-gated sodium channel Nav1.1 and beta4
Method: single particle / : Yan N, Pan X

PDB-7dtd:
Voltage-gated sodium channel Nav1.1 and beta4
Method: single particle / : Yan N, Pan X, Li Z, Huang G

EMDB-0338:
MS2 / F-pilus complex
Method: subtomogram averaging / : Hu B

EMDB-0448:
F-pilus/MS2 complex (Class 2 map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-0450:
F-pilus/MS2 complex (Class 3 map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-0451:
Enterobacteria phage MS2
Method: single particle / : Meng R, Cui Z, Zhang J

EMDB-0453:
F-pilus/MS2 complex (all particles map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-9397:
F-pilus/MS2 Maturation protein complex
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-9399:
F-pilus/MS2 complex (Class 1 map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

PDB-6nm5:
F-pilus/MS2 Maturation protein complex
Method: single particle / : Meng R, Chang J, Zhang J

EMDB-9779:
Reconstruction of HRPV6 VP5 spike
Method: subtomogram averaging / : Li S, Huiskonen JT

PDB-6j7v:
Structure of HRPV6 VP5 fitted in the cryoEM density of the spike
Method: subtomogram averaging / : El Omari K, Li S, Huiskonen JT, Stuart DI

EMDB-8897:
apo state full-length C.diff toxinB
Method: single particle / : Zhang J, Jiang M

EMDB-8898:
Clostridioides difficileC toxinB with DLD-4 darpin
Method: single particle / : Zhang J, Jiang M

PDB-6ar6:
Clostridioides difficile toxinB with DLD-4 darpin
Method: single particle / : Zhang J, Jiang M

EMDB-4209:
Subtomogram average of Rift Valley fever virus hexamer at pH 5.0 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4197:
Icosahedral reconstruction of Rift Valley fever virus virion
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4198:
Localized reconstruction of the Rift Valley fever virus glycoprotein hexamer type 1
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4199:
Localized reconstruction of the Rift Valley fever virus glycoprotein hexamer type 2
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4200:
Localized reconstruction of the Rift Valley fever virus glycoprotein hexamer type 3
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4201:
Localized reconstruction of the Rift Valley fever virus glycoprotein pentamer
Method: single particle / : Halldorsson S, Huiskonen JT

EMDB-4202:
Subtomogram average of Rift Valley fever virus pentamer at pH 7.5
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4203:
Subtomogram average of Rift Valley fever virus hexamer at pH 7.5
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4204:
Subtomogram average of Rift Valley fever virus pentamer at pH 7.5 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4205:
Subtomogram average of Rift Valley fever virus hexamer at pH 7.5 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4206:
Subtomogram average of Rift Valley fever virus pentamer at pH 7.5 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4207:
Subtomogram average of Rift Valley fever virus hexamer at pH 7.5 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4208:
Subtomogram average of Rift Valley fever virus pentamer at pH 5.0 in absence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4210:
Subtomogram average of Rift Valley fever virus pentamer at pH 5.0 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

EMDB-4211:
Subtomogram average of Rift Valley fever virus hexamer at pH 5.0 in presence of target membrane
Method: subtomogram averaging / : Sai L, Huiskonen JT

PDB-6f9b:
Asymmetric unit of Rift Valley fever virus glycoprotein shell
Method: single particle / : Halldorsson S, Bowden TA, Huiskonen JT

PDB-6f9c:
Model of the Rift Valley fever virus glycoprotein hexamer type 1
Method: single particle / : Halldorsson S, Bowden TA, Huiskonen JT

PDB-6f9d:
Model of the Rift Valley fever virus glycoprotein hexamer type 2
Method: single particle / : Halldorsson S, Bowden TA, Huiskonen JT

PDB-6f9e:
Model of the Rift Valley fever virus glycoprotein hexamer type 3
Method: single particle / : Halldorsson S, Bowden TA, Huiskonen JT

PDB-6f9f:
Model of the Rift Valley fever virus glycoprotein pentamer
Method: single particle / : Halldorsson S, Bowden TA, Huiskonen JT

EMDB-8316:
Wild-type E. coli GroEL bound with PepQ
Method: single particle / : Jiang M, Zhang J

EMDB-8317:
Wild-type E. coli GroEL
Method: single particle / : Jiang M, Zhang J

EMDB-8318:
Mutant E. coli GroEL (C-terminal truncated) bound with PepQ
Method: single particle / : Jiang M, Zhang J

EMDB-8319:
C-terminal truncated mutant E. coli GroEL
Method: single particle / : Jiang M, Zhang J

EMDB-9513:
Cryo-EM map of the rabbit voltage-gated calcium channel Cav1.1 at 3.6 angstrom resolution
Method: single particle / : Wu JP, Yan Z

EMDB-9514:
ClassIa map of the rabbit voltage-gated calcium channel Cav1.1
Method: single particle / : Wu JP, Yan Z, Li ZQ, Zhou Q, Yan N

EMDB-9515:
ClassII map of the rabbit voltage-gated calcium channel Cav1.1
Method: single particle / : Wu JP, Yan Z

PDB-5gjv:
Structure of the mammalian voltage-gated calcium channel Cav1.1 complex at near atomic resolution
Method: single particle / : Wu JP, Yan Z, Li ZQ, Zhou Q, Yan N

PDB-5gjw:
Structure of the mammalian voltage-gated calcium channel Cav1.1 complex for ClassII map
Method: single particle / : Wu JP, Yan Z, Li ZQ, Zhou Q, Yan N

EMDB-6475:
Cryo-EM structure of the rabbit voltage-gated calcium channel Cav1.1 at 4.2 angstrom resolution
Method: single particle / : Wu JP, Yan Z, Li ZQ, Yan N

EMDB-6476:
Cryo-EM structure of the rabbit voltage-gated calcium channel Cav1.1 at 6.1 angstrom resolution
Method: single particle / : Wu JP, Yan Z, Li ZQ, Yan N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more