[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 47 items for (author: matsunami & h)

EMDB-45876:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45879:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45881:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42785:
Consensus olfactory receptor consOR51 in complex with
Method: single particle / : Billesboelle CB, Manglik A

EMDB-45880:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42786:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42789:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42791:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42817:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uxv:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uxy:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uy0:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uyq:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-28900:
Propionate bound to human olfactory receptor OR51E2 in complex with miniGs399 (transmembrane domain)
Method: single particle / : Billesboelle CB, Manglik A

EMDB-28896:
Human olfactory receptor OR51E2 bound to propionate in complex with miniGs399
Method: single particle / : Billesboelle CB, Manglik A

PDB-8f76:
Human olfactory receptor OR51E2 bound to propionate in complex with miniGs399
Method: single particle / : Billesboelle CB, Manglik A

EMDB-31949:
Cryo-EM structure of Vaccinia virus scaffolding protein D13
Method: single particle / : Wolf M, Hyun J

EMDB-31950:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Method: single particle / : Wolf M, Hyun J

EMDB-31951:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Method: single particle / : Wolf M, Hyun J

EMDB-31952:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Method: single particle / : Wolf M, Hyun J

EMDB-31953:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 tubular assembly
Method: helical / : Hyun J, Matsunami H, Kim TG, Wolf M

EMDB-31954:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Method: single particle / : Wolf M, Hyun J

PDB-7vfd:
Cryo-EM structure of Vaccinia virus scaffolding protein D13
Method: single particle / : Wolf M, Hyun J, Matsunami H, Kim TG

PDB-7vfe:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Method: single particle / : Wolf M, Hyun J, Matsunami H, Kim TG

PDB-7vff:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Method: single particle / : Wolf M, Hyun J, Matsunami H, Kim TG

PDB-7vfg:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Method: single particle / : Wolf M, Hyun J, Matsunami H, Kim TG

PDB-7vfh:
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Method: single particle / : Wolf M, Hyun J, Matsunami H, Kim TG

EMDB-0724:
FimA type V pilus from P.gingivalis
Method: single particle / : Shibata S, Shoji M

PDB-6kmf:
FimA type V pilus from P.gingivalis
Method: single particle / : Shibata S, Shoji M, Matsunami H, Matthews M, Imada K, Nakayama K, Wolf M

EMDB-0768:
H3-CENP-A-H3 tri-nucleosome with the 22 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0769:
H3-CENP-A-H3 tri-nucleosome with the 30 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0770:
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA, Class1
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0771:
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA, Class2
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0772:
H3-H3-H3 tri-nucleosome with the 30 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

PDB-6l49:
H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Matsunami H, Ohi M, Wolf M, Kurumizaka H

PDB-6l4a:
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Matsunami H, Ohi M, Wolf M, Kurumizaka H

EMDB-9909:
Salmonella hook in curved state - unsymmetrized cryo-EM map
Method: single particle / : Shibata S, Matsunami H

PDB-6k3i:
Salmonella hook in curved state - 66 subunit models
Method: single particle / : Shibata S, Matsunami H, Wolf M, Aizawa S

PDB-6jzr:
Structure of the bacterial flagellar polyrod
Method: helical / : Saijo-Hamano Y, Matsunami H, Namba K, Imada K

PDB-6jzt:
Structure of the bacterial flagellar hook from Salmonella typhimurium
Method: helical / : Saijo-Hamano Y, Matsunami H, Namba K, Imada K

EMDB-6903:
Ebola virus nucleoprotein-RNA complex
Method: helical / : Sugita Y, Matsunami H, Kawaoka Y, Noda T, Wolf M

PDB-5z9w:
Ebola virus nucleoprotein-RNA complex
Method: helical / : Sugita Y, Matsunami H, Kawaoka Y, Noda T, Wolf M

EMDB-8179:
Campylobacter Hook
Method: helical / : Matsunami H, Wolf M, Samatey F

PDB-5jxl:
Cryo-EM structure of the flagellar hook of Campylobacter jejuni
Method: helical / : Matsunami H, Wolf M, Samatey FA

EMDB-1132:
A partial atomic structure for the flagellar hook of Salmonella typhimurium.
Method: helical / : Shaikh TR, Thomas DR, Chen JZ, Samatey FA, Matsunami H, Imada K, Namba K, DeRosier DJ

PDB-2bgy:
Fit of the x-ray structure of the baterial flagellar hook fragment flge31 into an EM map from the hook of Caulobacter crescentus.
Method: electron crystallography / : Shaikh TR, Thomas DR, Chen JZ, Samatey FA, Matsunami H, Imada K, Namba K, DeRosier DJ

PDB-2bgz:
ATOMIC MODEL OF THE BACTERIAL FLAGELLAR BASED ON DOCKING AN X-RAY DERIVED HOOK STRUCTURE INTO AN EM MAP.
Method: electron crystallography / : Shaikh TR, Thomas DR, Chen JZ, Samatey FA, Matsunami H, Imada K, Namba K, Derosier DJ

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more