[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 595 items for (author: ma & lj)

EMDB-56582:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S body)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-56583:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S head)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-66181:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-62662:
Cryo-EM structure of the LH1 complex from Roseiflexus castenholzii
Method: single particle / : Wang L, Yu LJ

EMDB-62663:
Cryo-EM structure of the RC complex from Rhodospirillum rubrum
Method: single particle / : Wang L, Yu LJ

EMDB-51820:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

EMDB-51899:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52095:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

EMDB-52299:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9h3g:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

PDB-9h6i:
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

PDB-9hes:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Method: single particle / : Faille A, Warren AJ

PDB-9hmw:
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Method: single particle / : Faille A, Warren AJ

EMDB-70676:
Cryo-EM Structure of the Escherichia phage HK446 Rip1 in complex with the Enterobacteria phage T6 small terminase
Method: single particle / : Patel PH, Maxwell KL, Norris MJ

EMDB-65730:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class A
Method: single particle / : Zheng R, Ma LJ

EMDB-65732:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class B
Method: single particle / : Zheng R, Ma LJ

EMDB-65733:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class C
Method: single particle / : Zheng R, Ma LJ

EMDB-65734:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class D
Method: single particle / : Zheng R, Ma LJ

EMDB-65771:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex
Method: single particle / : Zheng R, Ma LJ

EMDB-65809:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class B
Method: single particle / : Zheng R, Ma LJ

EMDB-65810:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex Class C
Method: single particle / : Zheng R, Ma LJ

EMDB-65827:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex Class E
Method: single particle / : Zheng R, Ma LJ

EMDB-63365:
Cryo-EM structure of light harvesting complex 2 from Ery. sanguineus
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-63370:
Cryo-EM structure of LH1-RC from Ery. sanguineus
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-52056:
Cryo-EM structure of photosystem II C2S2M2L2 supercomplex from the green alga Chlorella ohadii
Method: single particle / : Kopecny D, Kouril R, Ardhad R, Skalidis I, Kastritis P

PDB-9hd7:
Cryo-EM structure of photosystem II C2S2M2L2 supercomplex from the green alga Chlorella ohadii
Method: single particle / : Kopecny D, Kouril R, Ardhad R, Skalidis I, Kastritis P

EMDB-48424:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

PDB-9mni:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

EMDB-62054:
SuperFi Cas9 - 22nt sgRNA - DNA ternary complex
Method: single particle / : Zheng R, Ma LJ

EMDB-62055:
SuperFi Cas9 - 20nt sgRNA - DNA ternary complex
Method: single particle / : Zheng R, Ma LJ

EMDB-62056:
SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class1
Method: single particle / : Zheng R, Ma LJ

EMDB-62057:
SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class2
Method: single particle / : Zheng R, Ma LJ

EMDB-62059:
SuperFi Cas9 - mismatch 22nt sgRNA - DNA ternary complex class3
Method: single particle / : Zheng R, Ma LJ

EMDB-47340:
De novo calcium channel hexamer, CalC6_3 with DHR extensions
Method: single particle / : Weidle C, Liu Y, Borst AJ

EMDB-47356:
De novo calcium channel heptamer, CalC6_3 with DHR extensions. Off target multimerization state
Method: single particle / : Weidle C, Liu Y, Borst AJ

PDB-9dzw:
De novo calcium channel hexamer, CalC6_3 with DHR extensions
Method: single particle / : Weidle C, Liu Y, Borst AJ

PDB-9e0h:
De novo calcium channel heptamer, CalC6_3 with DHR extensions. Off target multimerization state
Method: single particle / : Weidle C, Liu Y, Borst AJ

EMDB-71559:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

PDB-9pee:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-53223:
The structure of the DNA-binding domain of Nuclear Factor 1 X bound to NFI consensus DNA sequence
Method: helical / : Tiberi M, Nardini M, Chaves-Sanjuan A, Gourlay LJ, Bonnet DMV

EMDB-62581:
Mechanistic insights into the versatile stoichiometry and biased signaling of the apelin receptor-arrestin complex
Method: single particle / : Yue Y, Wu LJ, Xu F

EMDB-62582:
Cryo-EM structure of dimeric APJR and two Beta-arrestins complex with small molecules
Method: single particle / : Yue Y, Wu LJ, Xu F

EMDB-62583:
Cryo-EM structure of dimeric APJR and one Beta-arrestin complex with small molecules
Method: single particle / : Yue Y, Wu LJ, Xu F

EMDB-54548:
Outer genome layer of Chaetoceros lorenzianus DNA virus (ClorDNAV), a CRESS-DNA bacilladnavirus
Method: single particle / : Munke A, Gebhard J

EMDB-54550:
Capsid structure of Chaetoceros lorenzianus DNA virus (ClorDNAV), a CRESS-DNA bacilladnavirus
Method: single particle / : Munke A, Gebhard J

EMDB-48672:
Consensus map of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

EMDB-62292:
cryo-EM structure of TRIP12 in complex with K29/48 branched-triUb
Method: single particle / : Ai HS, Wu XW, Liu L

EMDB-47426:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

PDB-9e21:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

EMDB-48669:
Focused map of Pfs230 domains 1-8 of the endogenous Pfs230-Pfs48/45 complex
Method: single particle / : Dietrich MH, Glukhova A, Shakeel S, Tham WH

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more