[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 202 items for (author: liu & yb)

EMDB-53008:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

PDB-9qcc:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

EMDB-49740:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49741:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49742:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

PDB-9nrx:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nry:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T

PDB-9nrz:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T

EMDB-60393:
Cryo-EM structure of AbCapV filemant bound with 3',3'-cGAMP with extra phospholipid density
Method: single particle / : Kong JP, Li ZX, Ke SY, Xiao YB

EMDB-61417:
Cryo-EM structure of AbCapV dimer, apo form
Method: single particle / : Kong JP, Li ZX, Ke SY, Wu WQ, Xiao YB

EMDB-61419:
Cryo-EM structure of AbCapV tetramer, intermediate form
Method: single particle / : Kong JP, Li ZX, Ke SY, Wu WQ, Xiao YB

EMDB-62291:
Cryo-EM structure of AbCapV S58A filament bound with 3'3'-cGAMP with extra phospholipid density
Method: single particle / : Kong JP, Li ZX, Wu WQ, Xiao YB

EMDB-63903:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-63933:
FADD-DED filaments coordinate complex IIa assembly during TNF-induced apoptosis
Method: single particle / : Liu P, Luo D

EMDB-62019:
The structure of Microviridae PJNS001
Method: single particle / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62020:
The Map of PJNS002 spike protein G with Salmonella enterica LPS
Method: single particle / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62021:
The STA map of PJNS001 attached on Salmonella outer membrane
Method: subtomogram averaging / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62022:
The STA map of PJNS002 attached on Salmonella outer membrane
Method: subtomogram averaging / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-62023:
The structure of Salmonella phage PJNS002
Method: single particle / : Hu WL, Chen YB, Wei YM, Gao Y

EMDB-46824:
Polyclonal immune complex of human subject 321-2006 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46825:
Polyclonal immune complex of human subject 321-2009 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46827:
Polyclonal immune complex of human subject 321-2012 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46829:
Polyclonal immune complex of Fab from Cynomolgus Macaque 6974 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46830:
Polyclonal immune complex of Fab from Rhesus Macaque BB798E at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46831:
Polyclonal immune complex of Fab from Cynomolgus Macaque T009 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46832:
Polyclonal immune complex of Fab from Cynomolgus Macaque R996 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-45636:
CryoEM structure of NC99 hemagglutinin trimer in complex with Fab BB798E 3-C07
Method: single particle / : Li N, Tsybovsky Y, Sangesland M, Kanekiyo M

EMDB-45637:
CryoEM structure of NC99 hemagglutinin trimer in complex with Fab T009 3-E04
Method: single particle / : Li N, Tsybovsky Y, Sangesland M, Kanekiyo M

PDB-9cjy:
CryoEM structure of NC99 hemagglutinin trimer in complex with Fab BB798E 3-C07
Method: single particle / : Li N, Tsybovsky Y, Sangesland M, Kanekiyo M

PDB-9cjz:
CryoEM structure of NC99 hemagglutinin trimer in complex with Fab T009 3-E04
Method: single particle / : Li N, Tsybovsky Y, Sangesland M, Kanekiyo M

EMDB-60944:
Cryo-EM structure of Lactobacillus casei DdmE bound with guide and target
Method: single particle / : Huang PP, Chen MR, Xiao YB

EMDB-60964:
Cryo-EM structure of Lactobacillus casei DdmD dimer bound with DNA
Method: single particle / : Huang PP, Chen MR, Xiao YB

EMDB-60967:
Focused map for area 1 of Lactobacillus casei DdmDE bound with DNA
Method: single particle / : Huang PP, Chen MR, Xiao YB

EMDB-60968:
Focused map for area 2 of Lactobacillus casei DdmDE bound with DNA
Method: single particle / : Huang PP, Chen MR, Xiao YB

EMDB-60969:
Raw consensus map of Lactobacillus casei DdmDE bound with DNA
Method: single particle / : Huang PP, Chen MR, Xiao YB

EMDB-60973:
Cryo-EM structure of Lactobacillus casei DdmDE bound with DNA
Method: single particle / : Huang PP, Chen MR, Xiao YB

EMDB-41729:
cryo-EM structure of GPR6-Gs-Nb35 complex
Method: single particle / : Barekatain M, Johansson LC, Lam JH, Sadybekov AV, Han GW, Popov P, Russo J, Bliesath J, Brice N, Beresford M, Carlson L, Saikatendu KS, Sun H, Murphy S, Monenschein H, Schiffer HH, Lutomski C, Robinson CV, Liu J, Hua T, Katritch V, Cherezov V

PDB-8tyw:
cryo-EM structure of GPR6-Gs-Nb35 complex
Method: single particle / : Barekatain M, Johansson LC, Lam JH, Sadybekov AV, Han GW, Popov P, Russo J, Bliesath J, Brice N, Beresford M, Carlson L, Saikatendu KS, Sun H, Murphy S, Monenschein H, Schiffer HH, Lutomski C, Robinson CV, Liu J, Hua T, Katritch V, Cherezov V

EMDB-41346:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41359:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41360:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41361:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41362:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tkc:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl2:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl3:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl4:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl5:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41461:
Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Method: single particle / : Wang S, Kwong PD

PDB-8tox:
Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab
Method: single particle / : Wang S, Kwong PD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more