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Showing 1 - 50 of 70 items for (author: lima & cd)
EMDB-44200:
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 1
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44201:
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44202:
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 3
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44203:
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 4
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44204:
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44205:
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44206:
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 7
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44207:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - consensus map and model
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44208:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from consensus
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44209:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from consensus
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44210:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 1 map and model (Ub(A)/ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44211:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 2 map and model (Ub(A)/ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44212:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 3 map and model (Ub(A)-AMP/PPi/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44213:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 4 map and model (Ub(A)-AMP/PPi/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44214:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 5 map and model (Ub(A)-AMP)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44215:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (Ub(A)/ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44216:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (Ub(A)-AMP)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44217:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - consensus map and model
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44218:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from consensus
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44219:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from consensus
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44220:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 1 map and model (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44221:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 2 map and model (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44222:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 3 map and model (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44223:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 4 map and model (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44224:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 5 map and model (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44225:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44226:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 1 (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44227:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 5 (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-44228:
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (ATP/Mg)
Method: single particle / : Kochanczyk T, Lima CD
EMDB-27273:
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex unbound but in the presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP
Method: single particle / : Lee HG, Lima CD
EMDB-27274:
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intA)
Method: single particle / : Lee HG, Lima CD
EMDB-27275:
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intB)
Method: single particle / : Lee HG, Lima CD
EMDB-27276:
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (uA)
Method: single particle / : Lee HG, Lima CD
EMDB-27277:
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uC)
Method: single particle / : Lee HG, Lima CD
EMDB-27278:
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uD)
Method: single particle / : Lee HG, Lima CD
EMDB-24882:
Human Nuclear exosome targeting (NEXT) complex homodimer bound to RNA (substrate 1)
Method: single particle / : Puno MR, Lima CD
EMDB-24883:
Human Nuclear Exosome Targeting (NEXT) complex bound to RNA (substrate 2)
Method: single particle / : Puno MR, Lima CD
EMDB-24884:
apo NEXT overall reconstruction
Method: single particle / : Puno MR, Lima CD
EMDB-26981:
Cryo-EM structure of Mtb Lpd bound to inhibitor complex with 2-((2-cyano-N,5-dimethyl-1H-indole)-7-sulfonamido)-N-(4-(oxetan-3-yl)-3,4-dihydro-2H-benzo[b] [1,4]oxazin-7-yl)acetamide
Method: single particle / : Kochanczyk T, Arango N, Lima CD
EMDB-7808:
Human nuclear exosome-MTR4 RNA complex - overall reconstruction
Method: single particle / : Weick EM, Lima CD
EMDB-7809:
Human nuclear exosome-MTR4 RNA complex - composite map after focused reconstruction
Method: single particle / : Weick EM, Lima CD
EMDB-7810:
Human nuclear exosome-MTR4 RNA complex - focused reconstruction on the nine-subunit core, MPP6, and EXOSC10
Method: single particle / : Weick EM, Lima CD
EMDB-7812:
Human nuclear exosome-MTR4 RNA complex - focused reconstruction on the DIS-PIN domain
Method: single particle / : Weick EM, Lima CD
EMDB-7813:
Human nuclear exosome-MTR4 RNA complex - focused reconstruction on MTR4
Method: single particle / : Weick EM, Lima CD
EMDB-7814:
Human nuclear exosome-MTR4 RNA complex - focused reconstruction on the DIS3-RNBCS domains
Method: single particle / : Weick EM, Lima CD
EMDB-7815:
Human nuclear exosome-MTR4 RNA complex - focused reconstruction on MTR4-dsDNA/RNA class
Method: single particle / : Weick EM, Lima CD
EMDB-7818:
Human nuclear exosome-MTR4 RNA complex - overall reconstruction - small class KOW domain open
Method: single particle / : Weick EM, Lima CD
EMDB-7819:
Human nuclear exosome-MTR4 RNA complex - overall reconstruction - small class KOW domain closed
Method: single particle / : Weick EM, Lima CD
EMDB-2248:
negative stain single-particle reconstruction of conformation I of the Ltn1 E3 ubiquitin Ligase
Method: single particle / : Lyumkis D, Doamekpor SK, Bengtson MH, Lee JW, Toro TB, Petroski MD, Lima CD, Potter CS, Carragher B, Joazeiro CAP
EMDB-2249:
negative stain single-particle reconstruction of conformation II of the Ltn1 E3 ubiquitin Ligase
Method: single particle / : Lyumkis D, Doamekpor SK, Bengtson MH, Lee JW, Toro TB, Petroski MD, Lima CD, Potter CS, Carragher B, Joazeiro CAP
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