[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,310 items for (author: li & yn)

EMDB-70477:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-63848:
Cryo-EM structure of the hGPR4-apo Receptor in pH 7.8
Method: single particle / : Zhong YN, Liu ZL, Guo LL, Sun JP, Yang F

EMDB-70050:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

EMDB-70051:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70052:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70054:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70478:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

PDB-9o2x:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl
Method: single particle / : Majumdar C, Kent A, Hamlish N, Zhu C, Cate J

PDB-9o2y:
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
Method: single particle / : Majumdar C, Cate JHD

EMDB-70055:
50S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70056:
30S focus refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site R-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-47752:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-47805:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e93:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e9v:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-55442:
mouse hippocampal CA1-sr synapse tomogram: CA1-sr dataset 2
Method: electron tomography / : Glynn C, Smith JLR

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-75514:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

PDB-10xu:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-70622:
Hepatitis C virus sE1E2.Cut1+2.SPYdeltaN bound to antibodies AR4A and AR3C
Method: single particle / : Janus BM, Gonzalez FG, Ofek G

EMDB-70623:
Hepatitis C virus sE1E2.Cut1+2.SPYdeltaN bound to antibodies AR4A and HEPC74
Method: single particle / : Janus BM, Gonzalez FG, Ofek G

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-55519:
cryo-EM structure of CPSF160-WDR33-ZC3H18
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

EMDB-55520:
cryo-EM map of the human mPSF with FIP1
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

PDB-9t3x:
cryo-EM structure of CPSF160-WDR33-ZC3H18
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

EMDB-73766:
Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

EMDB-73767:
Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

PDB-9z2d:
Mitochondrial Creatine Kinase in complex with ADP, creatine, and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

PDB-9z2f:
Mitochondrial Creatine Kinase in complex with ADP and uncompetitive inhibitor uci
Method: single particle / : Demir M, Zhao J, Sergienko E

EMDB-74763:
HIV-1 CH505.N197D Env Ectodomain (Mature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74779:
HIV-1 CH505.N197D Env Ectodomain (Immature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74786:
HIV-1 Env BG505.SOSIP
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74789:
HIV-1 ADA.CM Env
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74792:
HIV-1 BG505.755* Env
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74797:
HIV-1 ADA.CM.755* (Immature VLPs, Triton X-100 extracted)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74813:
HIV-1 ADA.CM.755* Env (Immature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74814:
HIV-1 ADA.CM.755* Env (Immature VLPs, tilted class)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-49474:
Honeybee silk hetereotetramer coiled coil
Method: single particle / : Johnston CL, Jobichen C

EMDB-71088:
MscS in Glyco-DIBMA Native Nanodiscs (C7 symmetry)
Method: single particle / : Moller E, Britt M, Zhou F, Yang H, Anishkin A, Ernst R, Juan VM, Sukharev S, Matthies D

PDB-9p0n:
MscS in Glyco-DIBMA Native Nanodiscs (C7 symmetry)
Method: single particle / : Moller E, Britt M, Zhou F, Yang H, Anishkin A, Ernst R, Juan VM, Sukharev S, Matthies D

EMDB-63353:
NTD of SARS-CoV-2 Delta variant Spike in complex with Fab854
Method: single particle / : Li YN, Yan RH

EMDB-54033:
LolCDE complex with Lpp lipoprotein
Method: single particle / : Symmons MF, Szewczyk P, Greene NP, Hardwick SW, Koronakis V

EMDB-54034:
LolCDE complex with Lpp lipoprotein
Method: single particle / : Symmons MF, Szewczyk P, Greene NP, Hardwick SW, Koronakis V

EMDB-54035:
LolCDE complex with Pal lipoprotein
Method: single particle / : Symmons MF, Szewczyk P, Greene NP, Hardwick SW, Koronakis V

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more