[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 147 items for (author: krishnan & ss)

EMDB-77042:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77043:
Apoferritin with crossed laser phase plate (xLPP), xLPP-on, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-77047:
Apoferritin with crossed laser phase plate (xLPP), xLPP-off, paired dataset
Method: single particle / : Yu Y, Kopylov M, Cheng A, Montabana E, Olshin P

EMDB-76895:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76896:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76898:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76899:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76900:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76901:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-72508:
BS3-crosslinked Smoothened/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74330:
SMO/PKA-C complex, mixed prior to grid preparation
Method: single particle / : Liu G, Myers BR

EMDB-74331:
SMO/PKA-C complex in MSP1E3D1 nanodiscs
Method: single particle / : Liu G, Myers BR

EMDB-74332:
Disulfide-trapped SMO-L637C/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74333:
EDC/Sulfo-NHS-crosslinked SMO/PKA-C complex
Method: single particle / : Liu G, Myers BR

EMDB-74334:
SMO/PKA-C complex, dual EDC/Sulfo-NHS and BS3 crosslinking
Method: single particle / : Liu G, Myers BR

EMDB-73631:
The Kaggle CryoET Object Identification Challenge: ground truth 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73633:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73634:
The Kaggle CryoET Object Identification Challenge: ground truth apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73635:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73636:
The Kaggle CryoET Object Identification Challenge: ground truth virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73637:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73638:
The Kaggle CryoET Object Identification Challenge: ground truth beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73639:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73640:
The Kaggle CryoET Object Identification Challenge: ground truth beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73641:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73642:
The Kaggle CryoET Object Identification Challenge: ground truth thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73643:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-46582:
Cryo-electron microscopy structure of TnsE-A453V/D523N bound to 3'-recessed DNA
Method: single particle / : Krishnan SS, Guarne A

EMDB-40218:
CryoEM structure of TnsC(1-503) bound to TnsD(1-318) from E.coli Tn7
Method: single particle / : Shen Y, Guarne A

EMDB-40221:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

EMDB-40222:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

EMDB-43138:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

EMDB-43140:
CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

PDB-8glu:
CryoEM structure of TnsC(1-503) bound to TnsD(1-318) from E.coli Tn7
Method: single particle / : Shen Y, Guarne A

PDB-8glw:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

PDB-8glx:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

PDB-8vcj:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

PDB-8vct:
CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

EMDB-36854:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Method: single particle / : Afsar M, Shukla A, Ramachandran R

EMDB-36860:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 1)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36868:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 2)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36883:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36885:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 1)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36886:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 2)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

PDB-8k3o:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Method: single particle / : Afsar M, Shukla A, Ramachandran R

PDB-8k4e:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-41837:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

PDB-8u1x:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

EMDB-42018:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

PDB-8u89:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more