[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 120 items for (author: krishnan & ss)

EMDB-46582:
Cryo-electron microscopy structure of TnsE-A453V/D523N bound to 3'-recessed DNA
Method: single particle / : Krishnan SS, Guarne A

EMDB-40218:
CryoEM structure of TnsC(1-503) bound to TnsD(1-318) from E.coli Tn7
Method: single particle / : Shen Y, Guarne A

EMDB-40221:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

EMDB-40222:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

EMDB-43138:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

EMDB-43140:
CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

PDB-8glu:
CryoEM structure of TnsC(1-503) bound to TnsD(1-318) from E.coli Tn7
Method: single particle / : Shen Y, Guarne A

PDB-8glw:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

PDB-8glx:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

PDB-8vcj:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

PDB-8vct:
CyoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 6:2:1 stoichiometry from E. coli Tn7 bound to ATPgS and ADP
Method: single particle / : Shen Y, Guarne A

EMDB-36854:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Method: single particle / : Afsar M, Shukla A, Ramachandran R

EMDB-36860:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 1)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36868:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex (Body 2)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36883:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36885:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 1)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-36886:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II (Body 2)
Method: single particle / : Ramachandran R, Afsar M, Shukla A

PDB-8k3o:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
Method: single particle / : Afsar M, Shukla A, Ramachandran R

PDB-8k4e:
Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Method: single particle / : Ramachandran R, Afsar M, Shukla A

EMDB-41837:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

PDB-8u1x:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

EMDB-42018:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

PDB-8u89:
The structure of the PP2A-B56Delta holoenzyme mutant - E197K
Method: single particle / : Wu CG, Xing Y

EMDB-34530:
Membrane protein A
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-34531:
Membrane protein B
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-35713:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8h86:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8h87:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR2 in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Yamashita K, Fukuda M, Deisseroth K, Kato HE

PDB-8iu0:
Cryo-EM structure of the potassium-selective channelrhodopsin HcKCR1 H225F mutant in lipid nanodisc
Method: single particle / : Tajima S, Kim Y, Nakamura S, Yamashita K, Fukuda M, Deisseroth K, Kato HE

EMDB-25363:
The structure of the PP2A-B56gamma1 holoenzyme-PME-1 complex
Method: single particle / : Li Y, Balakrishnan VK

PDB-7soy:
The structure of the PP2A-B56gamma1 holoenzyme-PME-1 complex
Method: single particle / : Li Y, Balakrishnan VK, Rowse M, Novikova IV, Xing Y

EMDB-11953:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Composite Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-11954:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 2)
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14810:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Consensus Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14811:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Focused Refinement
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-13856:
Tomogram of respiratory syncytial virus filamentous virion
Method: electron tomography / : Conley MJ, Vijayakrishnan S, Bhella D

EMDB-32377:
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE

EMDB-32378:
2.12 angstrom cryo-EM map of the pump-like channelrhodopsin ChRmine with Fab antibody fragment
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE

PDB-7w9w:
2.02 angstrom cryo-EM structure of the pump-like channelrhodopsin ChRmine
Method: single particle / : Kishi KE, Kim Y, Fukuda M, Yamashita K, Deisseroth K, Kato HE

EMDB-13855:
Structure of respiratory syncytial virus matrix layer
Method: subtomogram averaging / : Conley MJ, Vijayakrishnan S, Bhella D

EMDB-12600:
Structure of the Toxoplasma gondii kinase Ron13, kinase-dead mutant
Method: single particle / : Korkhov VM, Mehta V

PDB-7nur:
Structure of the Toxoplasma gondii kinase Ron13, kinase-dead mutant
Method: single particle / : Korkhov VM, Mehta V

EMDB-23077:
Hexameric protein arrangement under docked synaptic vesicles in primary hippocampal neurons
Method: subtomogram averaging / : Radhakrishnan A, Li X, Liu J

EMDB-20460:
Escherichia coli RNA polymerase closed complex (TRPc) with TraR and rpsT P2 promoter
Method: single particle / : Chen J, Chiu CE

EMDB-20461:
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1) with TraR and rpsT P2 promoter
Method: single particle / : Chen J, Chiu CE

EMDB-20462:
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5a) with TraR and mutant rpsT P2 promoter
Method: single particle / : Chen J, Chiu CE

EMDB-20463:
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5b) with TraR and mutant rpsT P2 promoter
Method: single particle / : Chen J, Chiu CE

EMDB-20464:
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi2) with TraR and rpsT P2 promoter
Method: single particle / : Chen J, Chiu CE

EMDB-20465:
Escherichia coli RNA polymerase promoter unwinding intermediate (TpreRPo) with TraR and rpsT P2 promoter
Method: single particle / : Chen J, Chiu CE

EMDB-20466:
Escherichia coli RNA polymerase promoter unwinding intermediate (TRPo) with TraR and rpsT P2 promoter
Method: single particle / : Chen J, Chiu CE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more