[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 164 items for (author: katharina & j)

EMDB-17197:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19108:
Human TPC2 in Complex withAntagonist (R)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

PDB-8ouo:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19450:
Human UPF1 RNA helicase with AMPPNP
Method: single particle / : Langer LM, Conti E

EMDB-19451:
Human UPF1 RNA helicase with AMPPNP and RNA
Method: single particle / : Langer LM, Conti E

EMDB-19005:
structure of the GLMP/MFSD1 complex
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-19006:
Lysosomal peptide transporter
Method: single particle / : Jungnickel KEJ, Loew C

PDB-8r8q:
Lysosomal peptide transporter
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-16552:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16553:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement 80S
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16554:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement RQT
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16805:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-16807:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8cr9:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8crb:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-17804:
Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

EMDB-17805:
MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

PDB-8ppk:
Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

PDB-8ppl:
MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
Method: single particle / : Schubert K, Karousis ED, Ban I, Lapointe CP, Leibundgut M, Baeumlin E, Kummerant E, Scaiola A, Schoenhut T, Ziegelmueller J, Puglisi JD, Muehlemann O, Ban N

EMDB-16110:
Human Urea Transporter UT-A (N-Terminal Domain Model)
Method: single particle / : Chi G, Pike ACW, Maclean EM, Mukhopadhyay SMM, Bohstedt T, Scacioc A, Wang D, McKinley G, Fernandez-Cid A, Arrowsmith CH, Bountra C, Edwards A, Burgess-Brown NA, van Putte W, Duerr K

EMDB-16111:
Map of Human Urea Transporter UT-A Collected with 0 and 30 Degree Tilts
Method: single particle / : Chi G, Pike ACW, Maclean EM, Bohstedt T, Wang D, Mckinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Edwards A, Arrowsmith C, Bountra C, Duerr KL

EMDB-16112:
Human Urea Transporter UT-B/UT1 in Complex with Inhibitor UTBinh-14
Method: single particle / : Chi G, Dietz L, Pike ACW, Maclean EM, Mukhopadhyay SMM, Bohstedt T, Wang D, Scacioc A, McKinley G, Arrowsmith CH, Edwards A, Bountra C, Fernandez-Cid A, Burgess-Brown NA, Duerr KL

PDB-8blo:
Human Urea Transporter UT-A (N-Terminal Domain Model)
Method: single particle / : Chi G, Pike ACW, Maclean EM, Mukhopadhyay SMM, Bohstedt T, Scacioc A, Wang D, McKinley G, Fernandez-Cid A, Arrowsmith CH, Bountra C, Edwards A, Burgess-Brown NA, van Putte W, Duerr K

PDB-8blp:
Human Urea Transporter UT-B/UT1 in Complex with Inhibitor UTBinh-14
Method: single particle / : Chi G, Dietz L, Pike ACW, Maclean EM, Mukhopadhyay SMM, Bohstedt T, Wang D, Scacioc A, McKinley G, Arrowsmith CH, Edwards A, Bountra C, Fernandez-Cid A, Burgess-Brown NA, Duerr KL

EMDB-15311:
Dedicated chaperone at the ribosome safeguards the proteostasis network during eEF1A biogenesis
Method: single particle / : Minoia M, Quintana-Cordero J, Katharina J, Kotan I, Turnbull KJ, Masser AE, Merker D, Gouarin E, Ehrenbolger K, Barandun J, Hauryliuk V, Bukau B, Kramer G, Andreasson C

EMDB-15228:
RQT-bound 80S ribosome from S. cerevisiae (C1, raw consensus map)
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-15243:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic ecumicin (class 2)
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

EMDB-33329:
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
Method: single particle / : Cheng J, Beckmann R

EMDB-33330:
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Method: single particle / : Cheng J, Beckmann R

PDB-7xnx:
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
Method: single particle / : Cheng J, Beckmann R

PDB-7xny:
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Method: single particle / : Cheng J, Beckmann R

EMDB-14861:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-14921:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-14926:
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-14978:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-14979:
Collided ribosome in a disome unit from S. cerevisiae
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16550:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - focused Refinement 80S
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16551:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - focused Refinement RQT
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-16571:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - consensus map
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

PDB-7zpq:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

PDB-7zrs:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

PDB-7zs5:
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

PDB-7zuw:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

PDB-7zux:
Collided ribosome in a disome unit from S. cerevisiae
Method: single particle / : Best KM, Ikeuchi K, Kater L, Best DM, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

EMDB-15240:
Mycobacterium tuberculosis ClpC1 hexamer structure
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

EMDB-15241:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Cyclomarin
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

EMDB-15242:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Ecumycin (class 1)
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

PDB-8a8u:
Mycobacterium tuberculosis ClpC1 hexamer structure
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

PDB-8a8v:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Cyclomarin
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

PDB-8a8w:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Ecumycin (class 1)
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more