[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 102 items for (author: kaiser & m)

EMDB-53132:
Rubisco subtomogram average from chloroplasts of two weeks old Physcomitrium patens protonemata cells.
Method: subtomogram averaging / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-53134:
Cryo-electron tomograms of Arabidopsis thaliana embryos.
Method: electron tomography / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-53136:
Cryo-electron tomograms of Limonium bicolor salt gland.
Method: electron tomography / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-53142:
Cryo-electron tomograms of Physcomitrium patens phyllids.
Method: electron tomography / : Poege M, Dickmanns M, Xu P, Li M, Schioetz OH, Kaiser COJ, Ma J, Bieber A, Capitanio C, Brenner JA, Riggi M, Miras M, Kazemein Jasemi NS, Schulze SX, Simon R, Frommer WB, Plitzko JM, Baumeister W

EMDB-52199:
Focused map of the MnmG dimer within the MnmE-MnmG a4b2 complex
Method: single particle / : Maes L, Galicia C, Fislage M, Versees W

PDB-9hir:
MnmG dimer within the MnmE-MnmG a4b2 complex
Method: single particle / : Maes L, Galicia C, Fislage M, Versees W

EMDB-19600:
GRP94-BiP complex, pre-loading conformation
Method: single particle / : Brenner JC, Zirden LC, Almeida-Hernandez Y, Kaschani F, Kaiser M, Sanchez-Garcia E, Poepsel S, Hellerschmied D

EMDB-19601:
GRP94-BiP complex, loading conformation
Method: single particle / : Brenner JC, Zirden LC, Almeida-Hernandez Y, Kaschani F, Kaiser M, Sanchez-Garcia E, Poepsel S, Hellerschmied D

EMDB-51901:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

PDB-9h6u:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

EMDB-49827:
Complex of BREX proteins BrxB and PglZ from Salmonella typhimurium
Method: single particle / : Doyle LA, Stoddard B, Blower TR, Kaiser B

PDB-9nv3:
Hybrid model of a complex of BREX proteins BrxB and PglZ from Salmonella typhimurium
Method: single particle / : Doyle LA, Stoddard B, Blower TR, Kaiser B

EMDB-19181:
Beta-galactosidase (LacZ) purified from E. coli.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-19182:
Beta-galactosidase (LacZ) in complex with glycosyrin from Pseudomonas syringae.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-19183:
Beta-galactosidase (LacZ) in complex with synthetic glycosyrin.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri6:
Beta-galactosidase (LacZ) purified from E. coli.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri7:
Beta-galactosidase (LacZ) in complex with glycosyrin from Pseudomonas syringae.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

PDB-8ri8:
Beta-galactosidase (LacZ) in complex with synthetic glycosyrin.
Method: single particle / : Hardenbrook NJ, Sheng Y, Zhang P

EMDB-41110:
Automethylated PRC2 dimer bound to nucleosome
Method: single particle / : Sauer PV, Pavlenko E, Nogales E, Poepsel S

EMDB-41141:
PRC2 monomer bound to nucleosome
Method: single particle / : Sauer PV, Pavlenko E, Nogales E, Poepsel S

EMDB-41146:
PRC2-J119-450 monomer bound to H1-nucleosome
Method: single particle / : Sauer PV, Cookis T, Pavlenko E, Nogales E, Poepsel S

EMDB-41147:
H1-nucleosome (chromatosome)
Method: single particle / : Sauer PV, Pavlenko E, Nogales E, Poepsel S

PDB-8t9g:
Automethylated PRC2 dimer bound to nucleosome
Method: single particle / : Sauer PV, Pavlenko E, Nogales E, Poepsel S

PDB-8tas:
PRC2 monomer bound to nucleosome
Method: single particle / : Sauer PV, Pavlenko E, Nogales E, Poepsel S

PDB-8tb9:
PRC2-J119-450 monomer bound to H1-nucleosome
Method: single particle / : Sauer PV, Cookis T, Pavlenko E, Nogales E, Poepsel S

EMDB-18538:
p97 in DNA origami cage
Method: single particle / : Manar E, Amelie HJ

EMDB-17528:
CryoEM structure of METTL6 tRNA SerRS complex in a 1:2:2 stoichiometry
Method: single particle / : Throll P, Dolce LG, Kowalinski E

EMDB-17529:
CryoEM structure of METTL6 tRNA SerRS complex in a 2:2:2 stoichiometry
Method: single particle / : Throll P, Dolce LG, Kowalinski E

EMDB-17530:
CryoEM structure of METTL6 tRNA SerRS complex in a 1:1:2 stoichiometry
Method: single particle / : Throll P, Dolce LG, Kowalinski E

EMDB-17531:
SerRS bound to serine tRNA
Method: single particle / : Throll P, Dolce LG, Kowalinski E

EMDB-17532:
Serine tRNA from Trichoplusia ni
Method: single particle / : Throll P, Dolce LG, Kowalinski E

PDB-8p7b:
CryoEM structure of METTL6 tRNA SerRS complex in a 1:2:2 stoichiometry
Method: single particle / : Throll P, Dolce LG, Kowalinski E

PDB-8p7c:
CryoEM structure of METTL6 tRNA SerRS complex in a 2:2:2 stoichiometry
Method: single particle / : Throll P, Dolce LG, Kowalinski E

PDB-8p7d:
CryoEM structure of METTL6 tRNA SerRS complex in a 1:1:2 stoichiometry
Method: single particle / : Throll P, Dolce LG, Kowalinski E

EMDB-16916:
Bipartite interaction of TOPBP1 with the GINS complex
Method: single particle / : Day M, Oliver AW, Pearl LH

PDB-8ok2:
Bipartite interaction of TOPBP1 with the GINS complex
Method: single particle / : Day M, Oliver AW, Pearl LH

EMDB-17241:
C. elegans L1 80S ribosome
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17242:
C. elegans L1 larva 80S ribosome class 1
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17243:
C. elegans L1 larva 80S ribosome class 2
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17244:
C. elegans L1 larva 80S ribosome class 3
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17245:
C. elegans L1 larva 80S ribosome class 4
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17246:
C. elegans L1 larva body wall muscle tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17247:
C. elegans L1 larva ventral pharyngeal periphery tomogram
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-17248:
Tomogram of the nucleus of a C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Beck F, Plitzko JM

EMDB-18186:
C. elegans L1 larva
Method: electron tomography / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-18187:
Focused refinment of 11-protofilament microtubule from C. elegans
Method: subtomogram averaging / : Schioetz OH, Kaiser CJO, Klumpe S, Klebl DP, Schneider J, Beck F, Plitzko JM

EMDB-16024:
SARS-CoV-2 S protein in complex with pT1644 Fab
Method: single particle / : Stroeh L, Hansen G, Vollmer B, Krey T, Benecke T, Gruenewald K

EMDB-16026:
SARS-CoV-2 S protein in complex with pT1696 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

EMDB-29930:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

PDB-8gcc:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more