[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 199 items for (author: johnson & mc)

EMDB-44585:
Cryo-EM structure of NINJ1 K45Q bound to Nb538

EMDB-43667:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs

EMDB-43670:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, global refinement

EMDB-43671:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, local refinement

EMDB-43672:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model

PDB-8vym:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs

PDB-8vyn:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model

EMDB-45078:
E.coli GroEL + PBZ1587 inhibitor

EMDB-45079:
E.coli GroEL apoenzyme

EMDB-45080:
E.Faecium GroEL

EMDB-45098:
E.coli GroEL + PBZ1587 inhibitor C1 reconstruction

PDB-9c0b:
E.coli GroEL + PBZ1587 inhibitor

PDB-9c0c:
E.coli GroEL apoenzyme

PDB-9c0d:
E.Faecium GroEL

EMDB-43139:
SARS-CoV-2 Spike S2 bound to Fab 54043-5

PDB-8vcr:
SARS-CoV-2 Spike S2 bound to Fab 54043-5

EMDB-42981:
Prefusion-stabilized Respirovirus type 3 Fusion protein

PDB-8v5a:
Prefusion-stabilized Respirovirus type 3 Fusion protein

EMDB-42983:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 4C03 and 4C06

EMDB-42987:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 1D10 and 4C06

PDB-8v5k:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 4C03 and 4C06

PDB-8v62:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 1D10 and 4C06

EMDB-43508:
Structure of a bacterial gasdermin small oval pore assembly

EMDB-43509:
Structure of a bacterial gasdermin medium oval pore assembly

EMDB-43510:
Structure of a bacterial gasdermin large oval pore assembly

EMDB-43511:
Structure of a bacterial gasdermin double pore assembly

EMDB-43513:
Structure of a bacterial gasdermin slinky-like oligomer from a heterogeneous sample

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-41153:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf

EMDB-41154:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf

EMDB-40570:
Structure of a bacterial gasdermin slinky-like oligomer

PDB-8sl0:
Structure of a bacterial gasdermin slinky-like oligomer

EMDB-27993:
Erwinia amlyavora 50S ribosome

EMDB-27898:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with 2-oxohexadecyl-CoA

EMDB-27899:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with CoA and palmitoyl-LPA

EMDB-28596:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394

PDB-8etr:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394

EMDB-25618:
SARS-CoV-2 VFLIP spike boung to 2 Ab12 Fab fragments

EMDB-24742:
PSMD2 with bound macrocycle MC1

EMDB-24743:
PSMD2

EMDB-25663:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map

EMDB-25689:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, global map with poorly-resolved RBDs and scFvs

EMDB-25690:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, local refinement map

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more