[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,140 items for (author: jing & t)

EMDB-55755:
Structure of the human inner kinetochore CCAN bound to a 3' CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-55756:
Structure of the human inner kinetochore CCAN bound to a 5' CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-55757:
Structure of the human inner kinetochore CCAN bound to DNA
Method: single particle / : Yu C, Muir KW, Barford D

EMDB-55758:
Structure of the human inner kinetochore CCAN bound to a mono-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-55759:
Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-56612:
Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome, consensus map
Method: single particle / : Yu C, Barford D

EMDB-56683:
Structure of the human inner kinetochore CCAN and CENP-C bound to DNA
Method: single particle / : Yu C, Barford D

PDB-28op:
Structure of the human inner kinetochore CCAN and CENP-C bound to DNA
Method: single particle / : Yu C, Barford D

PDB-9taw:
Structure of the human inner kinetochore CCAN bound to DNA
Method: single particle / : Yu C, Muir KW, Barford D

PDB-9tax:
Structure of the human inner kinetochore CCAN bound to a mono-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

PDB-9tay:
Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-67623:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67625:
Cryo-EM structure of DddT G101D in substrate-free outward open conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67626:
Cryo-EM structure of DddT in closed DMSP-bound conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-67627:
Cryo-EM structure of DddT in closed substrate-free conformation in the presence of potassium ions and dimethylsulfoniopropionate
Method: single particle / : Zhu WJ, Wang P

EMDB-67628:
Cryo-EM structure of DddT G101D in substrate-free inward open conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21ff:
Cryo-EM structure of DddT in closed substrate-free conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fh:
Cryo-EM structure of DddT G101D in substrate-free outward open conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fi:
Cryo-EM structure of DddT in closed DMSP-bound conformation
Method: single particle / : Zhu WJ, Wang P

PDB-21fj:
Cryo-EM structure of DddT in closed substrate-free conformation in the presence of potassium ions and dimethylsulfoniopropionate
Method: single particle / : Zhu WJ, Wang P

PDB-21fk:
Cryo-EM structure of DddT G101D in substrate-free inward open conformation
Method: single particle / : Zhu WJ, Wang P

EMDB-66211:
CryoEM structure of baseplate iris structure in the contracted AlgoCIS
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-66212:
CryoEM structure of one tail-fiber connected to the baseplate wedge in the contracted AlgoCIS
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-66213:
CryoEM structure of cap module in the contracted AlgoCIS
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-66214:
CryoEM structure of the proximal sheath layer connected to the baseplate wedge in the contracted AlgoCIS
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-69920:
CryoEM structure of the baseplate iris in the post-firing AlgoCIS upon low-pH treatment
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-69921:
CryoEM structure of the baseplate iris in the pre-firing non-contractile AlgoCIS upon low-pH treatment
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-69922:
CryoEM structure of the baseplate iris with partial open cage in the non-contractile AlgoCIS upon low-pH treatment
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-69923:
Sub-tomogram average of pre-firing AlgoCIS on the E. pacifica surface.
Method: subtomogram averaging / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-69925:
Cryo-tomogram of purified AlgoCIS incubated with E. pacifica.
Method: electron tomography / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

PDB-9wsz:
CryoEM structure of baseplate iris structure in the contracted AlgoCIS
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

PDB-9wt0:
CryoEM structure of one tail-fiber connected to the baseplate wedge in the contracted AlgoCIS
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

PDB-9wt1:
CryoEM structure of cap module in the contracted AlgoCIS
Method: single particle / : Xu J, Ericson CF, Toenshoff ER, Pilhofer M

EMDB-64640:
Cryo-EM structure of the nucleosome core particle with site-specific DNA-histone crosslinking
Method: single particle / : Zhou CZ, Li HT, Shan XJ, Ji GY

PDB-9uz7:
Cryo-EM structure of the nucleosome core particle with site-specific DNA-histone crosslinking
Method: single particle / : Zhou CZ, Li HT, Shan XJ, Ji GY

EMDB-64402:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-64403:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upu:
Cryo-EM strucutre of CXCR4 complexed with agonist SDV1a
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

PDB-9upv:
Cryo-EM structure of CXCR4 complexed with agonist SDVX1
Method: single particle / : Jiao HZ, Sang XH, Huang ZW, Hu HL

EMDB-65511:
CryoEM structure of T2R14 in complex with chlorhexidine and heterotrimeric G protein complex
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

EMDB-65512:
Cryo-EM structure of T2R14 in complex with tangeretin and heterotrimeric G protein
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

EMDB-65513:
Cryo-EM structure of apo-T2R46 in complex with heterotrimeric G protein
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

EMDB-65514:
CryoEM structure of T2R46 in complex with Arteminisin and heterotrimeric G protein complex
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

EMDB-65515:
CryoEM structure of the T2R46 in complex with Denatomium benozate and heterotrimeric G protein complex
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

EMDB-65516:
CryoEM structure of the T2R46 in complex with tangeretin and heterotrimeric G protein complex
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

EMDB-65518:
CryoEM structure of the T2R46 in complex with strychine and heterotrimeric G protein complex
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

PDB-9w0p:
CryoEM structure of T2R14 in complex with chlorhexidine and heterotrimeric G protein complex
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

PDB-9w0q:
Cryo-EM structure of T2R14 in complex with tangeretin and heterotrimeric G protein
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

PDB-9w0r:
Cryo-EM structure of apo-T2R46 in complex with heterotrimeric G protein
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

PDB-9w0s:
CryoEM structure of T2R46 in complex with Arteminisin and heterotrimeric G protein complex
Method: single particle / : Tan Q, Yu Y, Han X, Zhao Q, Wu B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more