[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 332 items for (author: jensen & g)

EMDB-53260:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo9:
Inward-occluded structure of human GABA transporter 3 bound to substrate GABA
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-53259:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

PDB-9qo8:
Inward-open structure of human GABA transporter 3 bound to selective inhibitor SR-THAP
Method: single particle / : Mortensen JS, Bavo F, Jensen MH, Pedersen APS, Storm JP, Pape T, Frolund B, Wellendorph P, Shahsavar A

EMDB-71739:
Legionella Dot/Icm T4SS
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72186:
Focused refinement map of the periplasmic part of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72187:
Focused refinement map of the cytoplasmic region of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-75244:
Cryo-tomogram of a patch-like NLRP3 inflammasome condensate at the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75245:
Cryo-tomogram of a solid-like NLRP3 inflammasome condensate at the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75246:
Cryo-tomogram of the MTOC in human THP-1 cells
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75247:
Cryo-tomogram of a matured NLRP3 inflammasome condensate at the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75248:
Cryo-tomogram of the MTOC in LPS-treated human THP-1 cells
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75249:
Cryo-tomogram of NLRP3-associated vesicles residing at the Golgi following LPS treatment
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75250:
Patch-like NLRP3 inflammasome condensate formed above or below the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-55519:
cryo-EM structure of CPSF160-WDR33-ZC3H18
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

EMDB-55520:
cryo-EM map of the human mPSF with FIP1
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

PDB-9t3x:
cryo-EM structure of CPSF160-WDR33-ZC3H18
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

EMDB-49201:
Cryo-EM structure of 110_C4 Fab in complex with CIDRa1.7 PfEMP1
Method: single particle / : Raghavan SSR, Ward AB

PDB-9naq:
Cryo-EM structure of 110_C4 Fab in complex with CIDRa1.7 PfEMP1
Method: single particle / : Raghavan SSR, Ward AB

EMDB-47928:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 (focused refinement of NTD and WRAIR-2008)
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

EMDB-48284:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with neutralizing human antibody WRAIR-2008
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

PDB-9ecz:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with human neutralizing antibody WRAIR-2008 (focused refinement of NTD and WRAIR-2008)
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

PDB-9mi3:
Cryo-EM structure of SARS-CoV-2 spike protein in complex with neutralizing human antibody WRAIR-2008
Method: single particle / : Jensen JL, Thomas PV, Joyce MG

EMDB-49290:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49291:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49306:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49326:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-52115:
Cryo-EM structure of the human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and capped-RNA
Method: single particle / : Dubiez E, Cusack S, Kadlec J

PDB-9hfl:
Cryo-EM structure of the human snRNA export complex comprising CBC-PHAX-CRM1-RanGTP and capped-RNA
Method: single particle / : Dubiez E, Cusack S, Kadlec J

EMDB-48707:
Clostridioides difficile Toxin A with mCDIFA-248-25 Fab
Method: single particle / : Huynh KW, Ammirati M, Kroh HK, Lacy DB, Han S

PDB-9mx1:
Clostridioides difficile Toxin A with mCDIFA-248-25 Fab
Method: single particle / : Huynh KW, Ammirati M, Kroh HK, Lacy DB, Han S

EMDB-50841:
Structure of methylamine activated CD109
Method: single particle / : Almeida AV, Andersen GR

EMDB-50842:
Structure of active human CD109
Method: single particle / : Almeida AV, Andersen GR

PDB-9fx2:
Structure of methylamine activated CD109
Method: single particle / : Almeida AV, Andersen GR

PDB-9fx3:
Structure of active human CD109
Method: single particle / : Almeida AV, Andersen GR

EMDB-19699:
Structure of native human CD109
Method: single particle / : Almeida VA, Andersen GR

PDB-8s3o:
Structure of native human CD109
Method: single particle / : Almeida VA, Andersen GR

EMDB-50600:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

PDB-9fno:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

EMDB-45577:
Cryo-EM Structural Analysis of Human Integrin Heterodimer bound to DNA Aptamer
Method: single particle / : Wang T

EMDB-50444:
Cryo-EM structure of human CD163 SRCR2-4 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

EMDB-50570:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

PDB-9fhb:
Cryo-EM structure of human CD163 SRCR2-4 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

PDB-9fmu:
Cryo-EM structure of human CD163 SRCR1-9 in complex with haptoglobin-hemoglobin
Method: single particle / : Andersen CBF, Kollman JM

EMDB-51524:
Maps from particle subsets of methylamine treated human complement C3 showing three distinct ANA positions
Method: single particle / : Joergensen MH, Andersen GR

EMDB-18256:
Cryo-EM structure of the magnesium channel CtMrs2 in the closed state
Method: single particle / : Gourdon P, Li P

EMDB-18257:
Cryo-EM structure of the magnesium channel CtMrs2 in the open state
Method: single particle / : Gourdon P, Li P

PDB-8q8p:
Cryo-EM structure of the magnesium channel CtMrs2 in the closed state
Method: single particle / : Gourdon P, Li P

PDB-8q8q:
Cryo-EM structure of the magnesium channel CtMrs2 in the open state
Method: single particle / : Gourdon P, Li P

EMDB-43148:
Cryo-EM structure of human monoclonal antibody C7 targeting IT4VAR22 CIDRa1.7 (PfEMP1 A)
Method: single particle / : Raghavan SSR, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more