[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 62 items for (author: ivic & n)

EMDB-43329:
Structure of VCP in complex with an ATPase activator (D2 domains only, hexameric form)
Method: single particle / : Jones NH, Urnivicius L, Kapoor TM

EMDB-43343:
Structure of VCP in complex with an ATPase activator (D2 domains only, dodecameric form)
Method: single particle / : Jones NH, Urnivicius L, Kapoor TM

EMDB-43392:
Structure of VCP in complex with an ATPase activator and ADP (D2 domains only, hexameric form)
Method: single particle / : Jones NH, Urnivicius L, Kapoor TM

PDB-8vku:
Structure of VCP in complex with an ATPase activator (D2 domains only, hexameric form)
Method: single particle / : Jones NH, Urnivicius L, Kapoor TM

PDB-8vls:
Structure of VCP in complex with an ATPase activator (D2 domains only, dodecameric form)
Method: single particle / : Jones NH, Urnivicius L, Kapoor TM

PDB-8vov:
Structure of VCP in complex with an ATPase activator and ADP (D2 domains only, hexameric form)
Method: single particle / : Jones NH, Urnivicius L, Kapoor TM

EMDB-17112:
Structure of apo form of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc
Method: single particle / : Odorcic I, Chavez Gutierrez L, Efremov RG

EMDB-17113:
Structure of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc in complex with Ab46
Method: single particle / : Odorcic I, Chavez Gutierrez L, Efremov RG

PDB-8oqy:
Structure of apo form of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc
Method: single particle / : Odorcic I, Chavez Gutierrez L, Efremov RG

PDB-8oqz:
Structure of human gamma-secretase PSEN1 APH-1B isoform reconstituted into lipid nanodisc in complex with Ab46
Method: single particle / : Odorcic I, Chavez Gutierrez L, Efremov RG

EMDB-29281:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-29282:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flk:
Cryo-EM structure of STING oligomer bound to cGAMP and NVS-STG2
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

PDB-8flm:
Cryo-EM structure of STING oligomer bound to cGAMP, NVS-STG2 and C53
Method: single particle / : Li J, Canham SM, Zhang X, Bai X, Feng Y

EMDB-16379:
Active state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16380:
Resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16381:
Resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma-2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16382:
Transmembrane domain of resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma 2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16390:
Transmembrane domain of active state homomeric GluA1 AMPA receptor in tandem with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16391:
Transmembrane domain of resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-17392:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I, Cais O

EMDB-17393:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I, Cais O

EMDB-17394:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 1
Method: single particle / : Zhang D, Krieger J, Yamashita K, Greger I

EMDB-17395:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Greger IH

EMDB-17396:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger IH

EMDB-17397:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 4
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

EMDB-17398:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

EMDB-17399:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

EMDB-17400:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

EMDB-17692:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger IH

PDB-8c1p:
Active state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c1q:
Resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c1r:
Resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma-2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c1s:
Transmembrane domain of resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma 2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c2h:
Transmembrane domain of active state homomeric GluA1 AMPA receptor in tandem with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c2i:
Transmembrane domain of resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8p3q:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

PDB-8p3s:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

PDB-8p3t:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 1
Method: single particle / : Zhang D, Krieger J, Yamashita K, Greger I

PDB-8p3u:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Greger IH

PDB-8p3v:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger IH

PDB-8p3w:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 4
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

PDB-8p3x:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

PDB-8p3y:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

PDB-8p3z:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

PDB-8piv:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger IH

EMDB-16470:
Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex - body 1
Method: single particle / : Ikeuchi K, Buschauer R, Cheng J, Berninghausen O, Becker T, Beckmann R

EMDB-16471:
in vitro reconstituted yeast 40S ribosome complex with deubiquitinating enzyme Otu2 bound to ubiquitinated eS7 - body 2 (40S head)
Method: single particle / : Ikeuchi K, Buschauer R, Cheng J, Berninghausen O, Becker T, Beckmann R

EMDB-16525:
Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
Method: single particle / : Ikeuchi K, Buschauer R, Cheng J, Berninghausen O, Becker T, Beckmann R

EMDB-16533:
Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
Method: single particle / : Ikeuchi K, Buschauer R, Cheng J, Berninghausen O, Becker T, Beckmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more