[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 784 items for (author: ikawa & m)

EMDB-66346:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-66347:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-66348:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-69899:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-69900:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-69901:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

PDB-9wxh:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

PDB-9wxi:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a cognate target RNA in the post-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

PDB-9wxj:
Cryo-EM structure of the type III-D2 CRISPR-Cas effector complex bound to a non-cognate target RNA in the pre-cleavage state
Method: single particle / : Mitsuda Y, Ishikawa J, Nagahata N, Hiraizumi M, Yamashita K, Nishimasu H

EMDB-80056:
APS kinase from Entamoeba histolytica
Method: single particle / : Hatanaka R, Kishikawa J, Shiba T

EMDB-66436:
Cryo-EM Structure of Turbo sazae ferritin chain A
Method: single particle / : Namikawa Y, Suzuki M

EMDB-66437:
Cryo-EM Structure of Turbo sazae ferritin chain B
Method: single particle / : Namikawa Y, Suzuki M

PDB-9x0k:
Cryo-EM Structure of Turbo sazae ferritin chain A
Method: single particle / : Namikawa Y, Suzuki M

PDB-9x0l:
Cryo-EM Structure of Turbo sazae ferritin chain B
Method: single particle / : Namikawa Y, Suzuki M

EMDB-66874:
Structure of the CCL19-CCR7-Gi-scFv16 complex
Method: single particle / : Tsutsumi N, Nishikawa K, Fujiyoshi Y

EMDB-66875:
Structure of the CCL21-CCR7-Gi-scFv16 complex
Method: single particle / : Tsutsumi N, Nishikawa K, Fujiyoshi Y

PDB-9xhh:
Structure of the CCL19-CCR7-Gi-scFv16 complex
Method: single particle / : Tsutsumi N, Nishikawa K, Fujiyoshi Y

PDB-9xhi:
Structure of the CCL21-CCR7-Gi-scFv16 complex
Method: single particle / : Tsutsumi N, Nishikawa K, Fujiyoshi Y

EMDB-65577:
Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65578:
Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65579:
Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65580:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65581:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65583:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65584:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-2
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65585:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65586:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-B
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-65587:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-C
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2r:
Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial particles (FoF1-1)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2s:
Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial particles (FoF1-2)
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2t:
Cryo-EM structure of Fo domain of FoF1-ATPase monomer state on the bovine heart submitochondrial particles
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2u:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, open
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2v:
Cryo-EM structure of complex I on the bovine heart submitochondrial particles, closed
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2x:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-1
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2y:
Cryo-EM structure of complex III on the bovine heart submitochondrial particles, III-2
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

PDB-9w2z:
Cryo-EM structure of complex IV on the bovine heart submitochondrial particles, IV-A
Method: single particle / : Nakano A, Masuya T, Akisada S, Ishikawa-Fukuda M, Mitsuoka K, Miyoshi H, Murai M, Yokoyama K

EMDB-63920:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state2
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

EMDB-63921:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state3
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

PDB-9u6r:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state2
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

PDB-9u6s:
Cryo-EM structure of the Vo domain of V/A-ATPase in liposomes under no pmf condition,state3
Method: single particle / : Nakano A, Kishikawa J, Nishida Y, Shigematsu H, Gerle C, Mitsuoka M, Yokoyama K

EMDB-61568:
human GM-CSF with Fabs from autoantibodies, F1 and BD.
Method: single particle / : Kishikawa J, Kato T, Kurosaki T, Inoue T

EMDB-61569:
human GM-CSF with Fabs from autoantibodies, F1 and C.
Method: single particle / : Kishikawa J, Kato T, Kurosaki T, Inoue T

EMDB-55338:
Apoferritin from equine spleen, recovered from the synchrotron with 1 MGy X-ray dose
Method: single particle / : Blum TB, Korkhov VM

EMDB-55343:
Apoferritin from equine spleen, recovered from the synchrotron with 0 MGy X-ray dose
Method: single particle / : Blum TB, Korkhov VM

EMDB-55344:
Apoferritin from equine spleen, recovered from the synchrotron with 100 MGy X-ray dose
Method: single particle / : Blum TB, Korkhov VM

EMDB-65918:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

PDB-9wey:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

EMDB-68587:
Cryo-EM consensus map of Bovine lactoferrin in water
Method: single particle / : Wada M, Yamazaki K, Wada Y, Ohga K, Ishii Y, Nakagawa A, Yoshikara H, Okuno S, Nojima T, Ochi H, Hirose M, Kato T, Katoh T

EMDB-68586:
Cryo-EM consensus map of Bovine lactoferrin in TBS buffer
Method: single particle / : Wada M, Yamazaki K, Wada Y, Ohga K, Ishii Y, Nakagawa A, Yoshikawa H, Okuno S, Nojima T, Ochi H, Hirose M, Kato T, Katoh T

EMDB-54428:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more