[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 62 items for (author: hamaguchi & t)

EMDB-61339:
Engineering of ATP synthase
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61340:
Engineering of ATP synthase Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61341:
Engineering of ATP synthase single stalk1
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61342:
Engineering of ATP synthase single stalk2
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61343:
Engineering of ATP synthase single stalk3
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61344:
Engineering of ATP synthase Double stalks1,2
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61345:
Engineering of ATP synthase Double stalks1,3
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61346:
Engineering of ATP synthase Double stalks2,3
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61347:
Engineering of ATP synthase Zero stalk
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61348:
Engineering of ATP synthase single stalk1 Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61349:
Engineering of ATP synthase single stalk2 Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61350:
Engineering of ATP synthase single stalk3 Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61351:
Engineering of ATP synthase Double stalks1,2 Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61352:
Engineering of ATP synthase Double stalks1,3 Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61353:
Engineering of ATP synthase Double stalks2,3 Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-61354:
Engineering of ATP synthase Zero stalk Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

PDB-9jc1:
Engineering of ATP synthase
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

PDB-9jc2:
Engineering of ATP synthase Fo
Method: single particle / : Hamaguchi-Suzuki N, Ueno H, Yasuda K, Marui R, Adachi N, Senda T, Noji H, Murata T

EMDB-60718:
Cryo-EM structure of G1-ATPase dimer from Mycoplasma mobile gliding machinery
Method: single particle / : Toyonaga T, Kato T, Kawamoto A, Miyata T, Kawakami K, Fujita J, Hamaguchi T, Namba K, Miyata M

PDB-9io5:
Cryo-EM structure of G1-ATPase dimer from Mycoplasma mobile gliding machinery
Method: single particle / : Toyonaga T, Kato T, Kawamoto A, Miyata T, Kawakami K, Fujita J, Hamaguchi T, Namba K, Miyata M

EMDB-38740:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

EMDB-38741:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

EMDB-60404:
Cryo-EM structure focused on the receptor of the ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

PDB-8xwp:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

PDB-8xwq:
Cryo-EM structure of ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

PDB-8zrt:
Cryo-EM structure focused on the receptor of the ET-1 bound ETBR-DNGI complex
Method: single particle / : Tani K, Maki-Yonekura S, Kanno R, Negami T, Hamaguchi T, Hall M, Mizoguchi A, Humbel BM, Terada T, Yonekura K, Doi T

EMDB-38986:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

EMDB-38987:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

PDB-8y6h:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

PDB-8y6i:
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
Method: single particle / : Hamaguchi-Suzuki N, Adachi N, Moriya T, Kawasaki M, Suzuki K, Anzai N, Senda T, Murata T

EMDB-37480:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

PDB-8wey:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

EMDB-35981:
Single-particle cryo-EM structure of mouse apoferritin at 1.49 Angstrom resolution (Dataset B)
Method: single particle / : Kawakami K, Maki-Yonekura S, Hamaguchi T, Takaba K, Yonekura K

EMDB-35984:
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Method: single particle / : Kawakami K, Maki-Yonekura S, Hamaguchi T, Takaba K, Yonekura K

PDB-8j5a:
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Method: single particle / : Kawakami K, Maki-Yonekura S, Hamaguchi T, Takaba K, Yonekura K

EMDB-34859:
Heteromeric ring comprised of peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C) and TkPrx C46S/F76C/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F76C) (Naph@(MIX|3:3))
Method: single particle / : Himiyama T, Hamaguchi T, Yonekura K, Nakamura T

PDB-8hla:
Heteromeric ring comprised of peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C) and TkPrx C46S/F76C/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F76C) (Naph@(MIX|3:3))
Method: single particle / : Himiyama T, Hamaguchi T, Yonekura K, Nakamura T

EMDB-33593:
Structure of the Anabaena PSI-monomer-IsiA supercomplex
Method: single particle / : Nagao R, Kato K, Hamaguchi T, Kawakami K, Yonekura K, Shen JR

PDB-7y3f:
Structure of the Anabaena PSI-monomer-IsiA supercomplex
Method: single particle / : Nagao R, Kato K, Hamaguchi T, Kawakami K, Yonekura K, Shen JR

EMDB-34618:
Cryo-EM structure of Beta-galactosidase at 1.57A resolution
Method: single particle / : Hamaguchi T, Yonekura K

EMDB-31944:
Pentacylindrical allophycocyanin core from Thermosynechococcus vulcanus
Method: single particle / : Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K

PDB-7vea:
Pentacylindrical allophycocyanin core from Thermosynechococcus vulcanus
Method: single particle / : Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K

EMDB-31945:
Phycocyanin rod structure of cyanobacterial phycobilisome
Method: single particle / : Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K

PDB-7veb:
Phycocyanin rod structure of cyanobacterial phycobilisome
Method: single particle / : Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K

EMDB-31455:
Cryo-EM Structure of primitive cyanobacterium photosystem I
Method: single particle / : Kato K, Hamaguchi T

PDB-7f4v:
Cryo-EM structure of a primordial cyanobacterial photosystem I
Method: single particle / : Kato K, Hamaguchi T, Nagao R, Kawakami K, Yonekura K, Shen JR

EMDB-31520:
Negative stain map of chained F1-like ATPase complex of Mycoplasma mobile
Method: single particle / : Toyonaga T, Miyata M

EMDB-31062:
Structure of monomeric photosystem II
Method: single particle / : Yu H, Hamaguchi T

PDB-7eda:
Structure of monomeric photosystem II
Method: single particle / : Yu H, Hamaguchi T, Nakajima Y, Kato K, kawakami K, Akita F, Yonekura K, Shen JR

EMDB-31053:
Cryo-EM structure of Isocitrate lyase-1 from Candida albicans
Method: single particle / : Hiragi K, Nishio K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more