[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 37 items for (author: geri & a)

EMDB-48818:
Low resolution cryo-EM reconstruction of the DY2 collagen mimetic fibrils
Method: single particle / : Kreutzberger MAB, Cole CC, Egelman EH, Hartgerink JD

EMDB-52339:
Structural insights in the HuHf@gold-monocarbene adduct: aurophilicity revealed in a biological context
Method: single particle / : Cosottini L, Giachetti A, Guerri A, Martinez-Castillo A, Geri A, Zineddu S, Abrescia NGA, Messori L, Turano P, Rosato A

PDB-9hq6:
Structural insights in the HuHf@gold-monocarbene adduct: aurophilicity revealed in a biological context
Method: single particle / : Cosottini L, Giachetti A, Guerri A, Martinez-Castillo A, Geri A, Zineddu S, Abrescia NGA, Messori L, Turano P, Rosato A

EMDB-45363:
Cryo-EM structure of the C1q A, B-crt, C peptide assembly narrow region
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-45365:
Cryo-EM structure of the C1q A, B-crt, C-M10F peptide assembly
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink EH

EMDB-45371:
Cryo-EM structure of the C1q A, B-crt, C peptide full assembly
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-45372:
Cryo-EM structure of the human C1q collagenous stem
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-45373:
Cryo-EM map of the C1q A, B-Crt, C-M10N collagenous stem assembly
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

PDB-9c9l:
Cryo-EM structure of the C1q A, B-crt, C peptide assembly narrow region
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

PDB-9c9u:
Cryo-EM structure of the C1q A, B-crt, C peptide full assembly
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-44405:
Low-resolution cryo-EM structure of the DES-1 collagen-like peptide doublet assembly
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-44406:
Cryo-EM structure of the DES-1 collagen-like peptide octadecameric assembly with C6 symmetry
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-44409:
Cryo-EM structure of the pentadecameric DES-1 collagen-like assembly
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-44418:
Cryo-EM structure of the SPA-human octadecameric collagen-like assembly
Method: single particle / : Kreutzberger MA, Yu LT, Egelman EH, Hartgerink JD

EMDB-47333:
CryoEM structure of the human antibodies PIV3HN-05 and PIV3HN-13 in complex with the parainfluenza virus hemagglutinin-neuraminidase protein
Method: single particle / : Mousa JJ, Miller RJ

PDB-9dzq:
CryoEM structure of the human antibodies PIV3HN-05 and PIV3HN-13 in complex with the parainfluenza virus hemagglutinin-neuraminidase protein
Method: single particle / : Mousa JJ, Miller RJ

EMDB-28960:
Cryo-electron microscopy structure of the octadecameric collagen-like (ABC-Ala)6 peptide triple helical assembly
Method: single particle / : Kreutzberger MA, Yu LT, Hancu MC, Egelman EH, Hartgerink JD

EMDB-26704:
Cryo-EM Structure of the Neutralizing Antibody MPV467 in Complex with Prefusion Human Metapneumovirus F Glycoprotein
Method: single particle / : Rush SA, McLellan JS

PDB-7ur4:
Cryo-EM Structure of the Neutralizing Antibody MPV467 in Complex with Prefusion Human Metapneumovirus F Glycoprotein
Method: single particle / : Rush SA, McLellan JS

EMDB-24794:
GLP-1 receptor bound with Pfizer small molecule agonist
Method: single particle / : Liu Y, Dias JM

PDB-7s15:
GLP-1 receptor bound with Pfizer small molecule agonist
Method: single particle / : Liu Y, Dias JM, Han S

EMDB-26586:
Negative stain EM map of Y2 COBRA hemagglutinin in complex with monoclonal antibody P1-05
Method: single particle / : Han J, Dzimianski JV, DuBois RM, Ward A

EMDB-11814:
The cryo-EM structure of the Vag8-C1 inhibitor complex
Method: single particle / : Johnson S, Lea SM

PDB-7akv:
The cryo-EM structure of the Vag8-C1 inhibitor complex
Method: single particle / : Johnson S, Lea SM, Deme JC, Furlong E, Dhillon A

EMDB-4790:
In situ subtomogram average of Arp2/3 complex-mediated branch junctions from Dictyostelium discoideum
Method: subtomogram averaging / : Jasnin M, Fukuda Y, Beck F

EMDB-4797:
In situ subtomogram average of 80S ribosome from Dictyostelium discoideum
Method: subtomogram averaging / : Jasnin M, Fukuda Y, Beck F

EMDB-0553:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Method: single particle / : Meyer NL, Xie Q

PDB-6nz0:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Method: single particle / : Meyer NL, Xie Q, Davulcu O, Yoshioka C, Chapman MS

EMDB-0621:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: subtomogram averaging / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0622:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: subtomogram averaging / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0623:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: electron tomography / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0624:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: electron tomography / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-7793:
Thermostablilized dephosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR

EMDB-7794:
Thermostabilized phosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR

PDB-6d3r:
Thermostablilized dephosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR

PDB-6d3s:
Thermostabilized phosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR, Chen ZJ

EMDB-1097:
Nuclear pore complex structure and dynamics revealed by cryoelectron tomography.
Method: subtomogram averaging / : Beck M, Forster F, Ecke M, Plitzko JM, Melchior F, Gerisch G, Baumeister W, Medalia O

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more