[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 540 items for (author: fernandez & is)

EMDB-54480:
Tomogram of unbudded yeast cell overexpressing Ldm1
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54483:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54486:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor (unbudded region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54487:
Tomogram of yeast cell overexpressing Ldm1, treated with alpha-factor(bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54489:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-54497:
Tomogram of a yeast cell treated with alpha-factor (bud region)
Method: electron tomography / : Keller J, Diep DTV, Zhao XT, Bohnert M, Fernandez-Busnadiego R

EMDB-52247:
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH P/E-site tRNA AND mRNA : LM14Cs1H3 sKO STRAIN
Method: single particle / : Rajan KS, Yonath A

EMDB-52258:
CRYO-EM CONSENSUS MAP OF LEISHMANIA MAJOR 80S RIBOSOME WITH P/E-site tRNA AND mRNA : LM14Cs1H3 sKO STRAIN
Method: single particle / : Rajan KS, Yonath A

EMDB-52259:
CRYO-EM FOCUSED REFINEMENT MAP OF LEISHMANIA MAJOR 80S RIBOSOME WITH P/E-site tRNA AND mRNA : LM14Cs1H3 sKO STRAIN
Method: single particle / : Rajan KS, Yonath A

PDB-9hl9:
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH P/E-site tRNA AND mRNA : LM14Cs1H3 sKO STRAIN
Method: single particle / : Rajan KS, Yonath A

EMDB-49201:
Cryo-EM structure of 110_C4 Fab in complex with CIDRa1.7 PfEMP1
Method: single particle / : Raghavan SSR, Ward AB

EMDB-46479:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46481:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46482:
Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46487:
Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46495:
Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46496:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d21:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d23:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d24:
Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d27:
Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d2g:
Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-51827:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the closed conformation, apo state
Method: single particle / : Fernandez I, Rey FA

EMDB-51844:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the 1-RBD-up conformation
Method: single particle / : Fernandez I, Rey FA

EMDB-51845:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike protein in the 2-RBD-up conformation
Method: single particle / : Fernandez I, Rey FA

EMDB-51846:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike protein in the open conformation
Method: single particle / : Fernandez I, Rey FA

EMDB-53679:
Local refinement of the N-terminal domain (NTD) and receptor binding domain (RBD) from the Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the closed conformation
Method: single particle / : Fernandez I, Rey FA

EMDB-53680:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike protein in the closed conformation bound to 9-O-Ac-Sia.
Method: single particle / : Fernandez I, Rey FA

EMDB-53681:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike protein in the 1-RBD-up conformation, bound to 9-O-Ac-Sia
Method: single particle / : Fernandez I, Rey FA

EMDB-53682:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike protein in the 2-RBD-up conformation, bound to 9-O-Ac-Sia
Method: single particle / : Fernandez I, Rey FA

EMDB-53683:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike protein in the open conformation, bound to 9-O-Ac-Sia
Method: single particle / : Fernandez I, Rey FA

EMDB-53684:
Local refinement of the N-terminal domain (NTD) and receptor binding domain (RBD) from the Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the closed conformation bound to 9-O-Ac-Sia
Method: single particle / : Fernandez I, Rey FA

EMDB-53685:
Local refinement of the N-terminal domain (NTD) from the Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the open conformation bound to 9-O-Ac-Sia
Method: single particle / : Fernandez I, Rey FA

PDB-9h3j:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the closed conformation, apo state
Method: single particle / : Fernandez I, Rey FA

PDB-9r6o:
Local refinement of the N-terminal domain (NTD) and receptor binding domain (RBD) from the Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the closed conformation
Method: single particle / : Fernandez I, Rey FA

PDB-9r6p:
Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike protein in the closed conformation bound to 9-O-Ac-Sia.
Method: single particle / : Fernandez I, Rey FA

PDB-9r6q:
Local refinement of the N-terminal domain (NTD) and receptor binding domain (RBD) from the Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the closed conformation bound to 9-O-Ac-Sia
Method: single particle / : Fernandez I, Rey FA

PDB-9r6r:
Local refinement of the N-terminal domain (NTD) from the Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the open conformation bound to 9-O-Ac-Sia
Method: single particle / : Fernandez I, Rey FA

EMDB-49573:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

PDB-9nnf:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

EMDB-19790:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

EMDB-19811:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

PDB-8s82:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

PDB-8s8p:
Restriction on Ku Inward Translocation Caps Telomere Ends
Method: single particle / : Mattarocci S, Baconnais S, Roisne-Hamelin F, Pobiega S, Alibert O, Morin V, Deshayes A, Veaute X, Ropars V, Mazon G, Busso D, Fernandez Varela P, Le Cam E, Charbonnier J, Cuniasse P, Marcand S

EMDB-44380:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

PDB-9b9e:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-46437:
A 16-nm repeat of A-B Inner junction of TMT from the proximal region of basal body, wild-type
Method: subtomogram averaging / : Li S, Fernandez J, Ruehle M, Fabritius A, Pearson C, Agard DA, Winey M

EMDB-46438:
A 16-nm repeat of B-C Inner junction of TMT from the proximal region of basal body, wild-type
Method: subtomogram averaging / : Li S, Fernandez J, Ruehle M, Fabritius A, Pearson C, Agard DA, Winey M

EMDB-46439:
A 48-nm repeat of A-B inner junction of TMT from central core region of basal body, wild-type
Method: subtomogram averaging / : Li S, Fernandez J, Ruehle M, Fabritius A, Pearson C, Agard DA, Winey M

EMDB-46440:
A 16-nm repeat of A-B inner junction of TMT from the central core region of basal body, wild-type
Method: subtomogram averaging / : Li S, Fernandez J, Ruehle M, Fabritius A, Pearson C, Agard DA, Winey M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more