[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,068 items for (author: do & hn)

EMDB-74043:
Cryo-EM structure of the engineered vector AAV2.ATX002
Method: single particle / : Betegon M, Byrne LC, Conway JF

EMDB-71132:
Consensus refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-71133:
Focused refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-71134:
beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

PDB-9p1u:
beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-70486:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with taurochenodeoxycholic acid (TCDCA)
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-70487:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with methyl cholate
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-70488:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the closed CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-70489:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the open CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohc:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with taurochenodeoxycholic acid (TCDCA)
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohd:
CryoEM structure of Toxin B (TcdB) from clostridioides difficile complexed with methyl cholate
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohe:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the closed CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

PDB-9ohf:
CryoEM structure of apo Toxin B (TcdB) from Clostridioides difficile in the open CROP state
Method: single particle / : Miletic S, Li Z, Melnyk RA

EMDB-72314:
ABCE1-eRF1-RNC-AMD1C
Method: single particle / : Maldosevic E, Jomaa A

PDB-9q7q:
ABCE1-eRF1-RNC-AMD1C
Method: single particle / : Maldosevic E, Jomaa A

EMDB-48285:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

PDB-9mi8:
Human PARP1 N-terminal domains bound to nicked DNA
Method: single particle / : Sverzhinsky A, Pascal JM

EMDB-54384:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busandiego R

EMDB-54398:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busandiego R

EMDB-54405:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54406:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54407:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54420:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54421:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54422:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54424:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54432:
In situ cryo-electron tomogram of rat hippocampal synapse
Method: electron tomography / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-54447:
Subtomogram average of synaptic microtubule from rat hippocampal neurons
Method: subtomogram averaging / : Petrovic A, Do TT, Siegert A, Fernandez-Busnadiego R

EMDB-49972:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70206:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-70232:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70239:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Wendorff TJ, Rashid F, Beck C, Yan Q, Johnson HR, Eckerty RA, Fogg JM, Baker ML, Zechiedrich L, Berger JM

EMDB-70259:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o0g:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Berger JM

PDB-9o7o:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

PDB-9o8p:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Berger JM

PDB-9o8z:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Berger JM

PDB-9o9m:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-56238:
In situ cryo-ET subtomogram averaged map of Flotillin complex
Method: subtomogram averaging / : Li D, Lizarrondo J, Wilfling F

EMDB-56295:
In situ cryo-ET tomogram of a lysosomal structure in untreated HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56296:
In situ cryo-ET tomogram of lysosome damaged by LLOMe (0.5mM, 60min) in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56297:
In situ cryo-ET of lysosome damaged by LLOMe (0.5mM, 60min) encapsulated in an autophagosome in HeLa TMEM192-3xHA cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56298:
In situ cryo-ET tomogram of lysosomes in BAPTA AM pre-treated (50uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56300:
In situ cryo-ET tomogram of lysosomes in LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56327:
In situ cryo-ET tomogram of lysosomal structure in untreated rat hippocampal neurons
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-56329:
In situ cryo-ET tomogram of lysosomes in E64d pre-treated (20uM, 30min) and LLOMe (0.5mM, 60min) treated TMEM192-3xHA HeLa cell.
Method: electron tomography / : Li D, Wilfling F

EMDB-56330:
In situ cryo-ET tomogram of lysosomal structure in LLOMe-treated (0.5mM, 1h) rat hippocampal neuron.
Method: electron tomography / : Li D, Schwarz A, Wilfling F

EMDB-70395:
Ab1999 in complex with HIV-1 Env RC1
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more