[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 661 items for (author: dmitry & l)

EMDB-69590:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

PDB-24kr:
Structural basis of influenza A virus neutralization by broadly active single-domain antibody G2.3 recognizing glycosylated epitope within hemagglutinin stem
Method: single particle / : Ilyasov IO, Baymukhametov TN, Voronina DV, Vorobiev II, Khodak YA, Burtseva AD, Popov VO, Sluchanko NN, Shcheblyakov DV, Boyko KM

EMDB-55395:
Atg2-Atg18 complex from yeast
Method: single particle / : Chumpen Ramirez S, Shvarev D, Vargas Duarte P, Milach J, Lang E, Kuchenbuch S, Reggiori F, Moeller A, Ungermann C

PDB-9t0c:
Atg2-Atg18 complex from yeast
Method: single particle / : Chumpen Ramirez S, Shvarev D, Vargas Duarte P, Milach J, Lang E, Kuchenbuch S, Reggiori F, Moeller A, Ungermann C

EMDB-54951:
Cryo-EM structure of Human Apoferritin at pH 3.5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54952:
Cryo-EM structure of Human Apoferritin at pH 4
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54953:
Cryo-EM structure of Human Apoferritin at pH 5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54954:
Cryo-EM structure of Human Apoferritin at pH 7
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54955:
Cryo-EM structure of Human Apoferritin at pH 9
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjr:
Cryo-EM structure of Human Apoferritin at pH 3.5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjs:
Cryo-EM structure of Human Apoferritin at pH 4
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjt:
Cryo-EM structure of Human Apoferritin at pH 5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sju:
Cryo-EM structure of Human Apoferritin at pH 7
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

PDB-9sjv:
Cryo-EM structure of Human Apoferritin at pH 9
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-72221:
AK01 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

EMDB-72222:
XZ440 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

PDB-9q50:
AK01 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

PDB-9q57:
XZ440 integrase inhibitor bound to Wild-type HIV-1 intasome
Method: single particle / : Jing T, Li M, Lyumkis D

PDB-9p6r:
Structure of lysozyme-N,N',N"-triacetylchitotriose complex determined using REyes for automated MicroED
Method: electron crystallography / : Eremin D, Vlahakis NW, Rodriguez JA, Nelson HM

EMDB-64812:
Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64813:
Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64814:
Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64815:
Phycobilisome core from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64816:
Phycobilisome allophycocyanin hexamer C from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64817:
Phycobilisome rod R1 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64828:
Phycobilisome from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64851:
Phycobilisome from Gloeobacter violaceus PCC 7421, conformation with diverging rods
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64852:
Phycobilisome from Gloeobacter violaceus PCC 7421, conformation with parallel rods
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64868:
Phycobilisome from Gloeobacter violaceus PCC 7421,composite map
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7g:
Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7h:
Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7i:
Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7j:
Phycobilisome core from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7k:
Phycobilisome allophycocyanin hexamer C from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7l:
Phycobilisome rod R1 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-51324:
Cryo-EM structure of Thromboxane A2 receptor-miniGq protein complex bound to U46619
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-51331:
Cryo-EM structure of Thromboxane A2 receptor-miniGq Protein Complex bound to I-BOP
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-51332:
Consensus cryo-EM map of Thromboxane A2 receptor-Gq Protein Complex bound to U46619
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-51341:
Cryo-EM map of Thromboxane A2 receptor-Gq Protein Complex bound to U46619 focused refined on the receptor
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-51342:
Cryo-EM map of Thromboxane A2 receptor-Gq Protein Complex bound to U46619 focused refined on the G proteins
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-51343:
Cryo-EM map of Thromboxane A2 receptor-Gq Protein Complex bound to IBOP
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-51344:
Cryo-EM map of Thromboxane A2 receptor-Gq Protein Complex bound to I-BOP focused refined on the receptor
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-51345:
Cryo-EM map of Thromboxane A2 receptor-Gq Protein Complex bound to I-BOP focused refined on the G proteins
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

PDB-9gg5:
Cryo-EM structure of Thromboxane A2 receptor-miniGq protein complex bound to U46619
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

PDB-9ggg:
Cryo-EM structure of Thromboxane A2 receptor-miniGq Protein Complex bound to I-BOP
Method: single particle / : Matzov D, Krawinski P, Caffrey M, Shalev Benami M

EMDB-48412:
Structure of the human mitochondrial initially transcribing complex, IC3
Method: single particle / : Herbine KH, Nayak AR, Temiakov D

EMDB-48413:
Structure of the human mitochondrial open transcription initiation complex, IC0
Method: single particle / : Herbine KH, Nayak AR, Temiakov D

EMDB-48414:
Structure of the human mitochondrial late-stage transcription initiation complex, IC8
Method: single particle / : Herbine KH, Nayak AR, Temiakov D

EMDB-48415:
Structure of the human mitochondrial late-stage transcription initiation complex, IC8
Method: single particle / : Herbine KH, Nayak AR, Temiakov D

EMDB-48416:
Structure of the human mitochondrial transcription initiation transitional complex, TC8
Method: single particle / : Herbine KH, Nayak AR, Temiakov D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more