[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 272 items for (author: de & castro & c)

EMDB-51788:
Cryo EM structure of RC-dLH complex model II from Gemmatimonas groenlandica
Method: single particle / : Gardiner AT, Jing Y, Bina D, Mujakic I, Gardian Z, Kaftan D, Joosten M, Jakobi A, Castro-Hartmann P, Qian P, Koblizek M

PDB-9h22:
Cryo EM structure of RC-dLH complex model II from Gemmatimonas groenlandica
Method: single particle / : Gardiner AT, Jing Y, Bina D, Mujakic I, Gardian Z, Kaftan D, Joosten M, Jakobi A, Castro-Hartmann P, Qian P, Koblizek M

EMDB-70484:
Cryo-EM structure of the assembled MS2 CPM58 VLP
Method: single particle / : Liang S, Jung J, Tullman-Ercek D

PDB-9oh5:
Cryo-EM structure of the assembled MS2 CPM58 VLP
Method: single particle / : Liang S, Jung J, Tullman-Ercek D

EMDB-72735:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q9 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72736:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q10 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72737:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q12 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72738:
HIV-1 Env 16055 NFL TD CC2+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72739:
HIV-1 Env BG505 NFL TD CC3+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70353:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

PDB-9odb:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

EMDB-50405:
EM Map of KCC3b (SLC12A6b) in Complex with Nanobody Binder BN001T-N
Method: single particle / : Chi G, Bohstedt T, Stefanic S, Castro-Hartmann P, Qian P, Burgess-Brown N, Sader K, Duerr KL, Sauer DB

EMDB-50364:
EM Map of KCC3b (SLC12A6b) in Complex with Nanobody Binder BN001M-T
Method: single particle / : Chi G, Bohstedt T, Stefanic S, Castro-Hartmann P, Qian P, Burgess-Brown N, Sader K, Duerr KL, Sauer DB

EMDB-50406:
EM Map of KCC3b (SLC12A6b) in Complex with Nanobody Binder BN006A-P
Method: single particle / : Chi G, Bohstedt T, Geertsma E, Castro-Hartmann P, Qian P, Burgess-Brown N, Sader K, Duerr KL, Sauer DB

EMDB-50407:
EM Map of KCC3b (SLC12A6b) in Complex with Nanobody Binder BN001P-S
Method: single particle / : Chi G, Bohstedt T, Stefanic S, Castro-Hartmann P, Qian P, Burgess-Brown N, Sader K, Duerr KL, Sauer DB

EMDB-46047:
HIV Env JRFL NFL TD CC3+ trimer in complex with NHP #1 polyclonal Fab (gp120 interface, gp41-FP, gp41-base epitopes)
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-46048:
HIV Env ZM233 NFL TD CC3+ trimer in complex with NHP #1,2,3,4 polyclonal Fab (gp41-FP, gp41-base epitopes)
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-45928:
LJF-085 Fab in complex with HIV Env JRFL NFL TD CC3+ trimer and 35O22 Fab
Method: single particle / : Ozorowski G, Ward AB

EMDB-45929:
LJF-034 Fab in complex with HIV Env JRFL NFL TD CC3+ trimer and 35O22 Fab
Method: single particle / : Ozorowski G, Ward AB

EMDB-45957:
LJF-085 Fab in complex with HIV Env ZM233 NFL TD CC3+ trimer
Method: single particle / : Ozorowski G, Ward AB

EMDB-45978:
LJF-085 Fab in complex with HIV Env ZM233 NFL TD CC3+ dimer and 35O22 Fab
Method: single particle / : Ozorowski G, Ward AB

PDB-9cu5:
LJF-085 Fab in complex with HIV Env JRFL NFL TD CC3+ trimer and 35O22 Fab
Method: single particle / : Ozorowski G, Ward AB

PDB-9cu6:
LJF-034 Fab in complex with HIV Env JRFL NFL TD CC3+ trimer and 35O22 Fab
Method: single particle / : Ozorowski G, Ward AB

PDB-9cv7:
LJF-085 Fab in complex with HIV Env ZM233 NFL TD CC3+ trimer
Method: single particle / : Ozorowski G, Ward AB

EMDB-49656:
Rabbit RB142 polyclonal Fab in complex with HIV-1 1086C NFL Env trimer
Method: single particle / : Lin RN, Torres JL, Ozorowski G, Ward AB

EMDB-16862:
Molecular Mechanism of trypanosomal AQP2
Method: single particle / : Weyand SN, Matusevicius M, Yamashita K

EMDB-16863:
Molecular Mechanism of trypanosomal AQP2
Method: single particle / : Weyand SN, Matusevicius M, Yamashita K

EMDB-16864:
Molecular Mechanism of trypanosomal AQP2
Method: single particle / : Weyand SN, Matusevicius M, Yamashita K

EMDB-18180:
cryoEM structure of SARS-CoV2 Spike trimer in complex with Fab23
Method: single particle / : Hallberg M, Das H

PDB-8q5y:
cryoEM structure of SARS-CoV2 Spike trimer in complex with Fab23
Method: single particle / : Hallberg M, Das H

EMDB-16375:
SARS-CoV2 Omicron BA.1 RBD in complex with CAB-A17 antibody
Method: single particle / : Das H, Hallberg BM

PDB-8c0y:
SARS-CoV2 Omicron BA.1 RBD in complex with CAB-A17 antibody
Method: single particle / : Das H, Hallberg BM

EMDB-17451:
SARS-CoV-2 Spike RBD in complex with Mab-23 (Fab)
Method: single particle / : Das H, Hallberg BM

PDB-8p5m:
SARS-CoV-2 Spike RBD in complex with Mab-23 (Fab)
Method: single particle / : Das H, Hallberg BM

EMDB-42970:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

PDB-8v4f:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

EMDB-16397:
SARS-CoV2 Omicron BA.1 spike in complex with CAB-A17 antibody
Method: single particle / : Das H, Hallberg BM

PDB-8c2r:
SARS-CoV2 Omicron BA.1 spike in complex with CAB-A17 antibody
Method: single particle / : Das H, Hallberg BM

EMDB-17125:
Knockout of GMC-oxidoreductase genes reveals that functional redundancy preserves mimivirus essential functions
Method: helical / : Alempic JM, Bisio H, Villalta A, Santini S, Lartigue A, Schmitt A, Bugnot C, Notaro A, Belmudes L, Adrait A, Poirot O, Ptchelkine D, De Castro C, Coute Y, Abergel C

EMDB-17131:
Knockout of GMC-oxidoreductase genes reveals that functional redundancy preserves mimivirus essential functions
Method: helical / : Alempic JM, Bisio H, Villalta A, Santini S, Lartigue A, Schmitt A, Bugnot C, Notaro A, Belmudes L, Adrait A, Poirot O, Ptchelkine D, De Castro C, Coute Y, Abergel C

PDB-8orh:
Knockout of GMC-oxidoreductase genes reveals that functional redundancy preserves mimivirus essential functions
Method: helical / : Alempic JM, Bisio H, Villalta A, Santini S, Lartigue A, Schmitt A, Bugnot C, Notaro A, Belmudes L, Adrait A, Poirot O, Ptchelkine D, De Castro C, Coute Y, Abergel C

PDB-8ors:
Knockout of GMC-oxidoreductase genes reveals that functional redundancy preserves mimivirus essential functions
Method: helical / : Alempic JM, Bisio H, Villalta A, Santini S, Lartigue A, Schmitt A, Bugnot C, Notaro A, Belmudes L, Adrait A, Poirot O, Ptchelkine D, De Castro C, Coute Y, Abergel C

EMDB-15270:
SARS Cov2 Spike RBD in complex with Fab47
Method: single particle / : Hallberg BM, Das H

PDB-8a95:
SARS Cov2 Spike RBD in complex with Fab47
Method: single particle / : Hallberg BM, Das H

EMDB-15273:
SARS Cov2 Spike in 1-up conformation complex with Fab47
Method: single particle / : Hallberg BM, Das H

PDB-8a99:
SARS Cov2 Spike in 1-up conformation complex with Fab47
Method: single particle / : Hallberg BM, Das H

EMDB-15269:
SARS CoV2 Spike in the 2-up state in complex with Fab47
Method: single particle / : Hallberg BM, Das H

EMDB-15271:
SARS Cov2 Spike RBD in complex with Fab47
Method: single particle / : Hallberg BM, Das H

PDB-8a94:
SARS CoV2 Spike in the 2-up state in complex with Fab47.
Method: single particle / : Hallberg BM, Das H

PDB-8a96:
SARS Cov2 Spike RBD in complex with Fab47
Method: single particle / : Hallberg BM, Das H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more