[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: bulkley & d)

EMDB-43576:
Structure of murine heavy chain apoferritin collected at 120 keV with the Gatan Alpine direct detector
Method: single particle / : Maker A, Bulkley DP, Verba KA

EMDB-43685:
Structure of murine heavy chain apoferritin collected at 200 keV with the Gatan Alpine direct detector
Method: single particle / : Maker A, Bulkley DP, Verba KA

EMDB-43688:
Structure of murine heavy chain apoferritin collected at 200 keV with the Gatan K3 detector
Method: single particle / : Maker A, Bulkley DP, Verba KA

EMDB-43703:
Structure of murine heavy chain apoferritin collected at 300 keV with the Gatan K3 BioQuantum detector
Method: single particle / : Maker A, Bulkley DP, Verba KA

EMDB-43700:
Cryo-EM map of LKB1-STRADalpha-MO25alpha from TFS Glacios with Gatan Alpine detector at 120 keV
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-43701:
Cryo-EM map of LKB1-STRADalpha-MO25alpha from TFS Glacios with Gatan Alpine detector at 200 keV
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-43702:
Cryo-EM map of LKB1-STRADalpha-MO25alpha from TFS Glacios with Gatan K3 detector at 200 keV
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-43506:
Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Method: single particle / : Chan LM, Courteau BJ, Verba KA

PDB-8vsu:
Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-43527:
Apoferritin at 100 keV on Alpine detector with a side-entry cryoholder
Method: single particle / : Wu M, Lander GC

EMDB-43528:
Aldolase at 100 keV on the Alpine detector with a side-entry cryoholder
Method: single particle / : Wu M, Lander GC

PDB-8sbe:
Structure of the rat vesicular glutamate transporter 2 determined by single-particle Cryo-EM
Method: single particle / : Li F, Finer-Moore J, Eriksen J, Cheng Y, Edwards R, Stroud R

EMDB-22995:
Spike protein trimer
Method: single particle / : Asarnow D, Faust B, Bohn M, Bulkley D, Manglik A, Craik CS, Cheng Y

EMDB-22993:
SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22994:
SARS-CoV-2 Spike protein in complex with Fab 2H4
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22997:
SARS-CoV-2 spike glycoprotein:Fab 3D11 complex
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-23707:
SARS-CoV-2 Spike:5A6 Fab complex I focused refinement
Method: single particle / : Asarnow D, Cheng Y

EMDB-23709:
SARS-CoV-2 Spike:Fab 3D11 complex focused refinement
Method: single particle / : Asarnow D, Cheng Y

PDB-7kqb:
SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I
Method: single particle / : Asarnow D, Charles C, Cheng Y

PDB-7kqe:
SARS-CoV-2 spike glycoprotein:Fab 3D11 complex
Method: single particle / : Asarnow D, Charles C, Cheng Y

PDB-7m71:
SARS-CoV-2 Spike:5A6 Fab complex I focused refinement
Method: single particle / : Asarnow D, Cheng Y

PDB-7m7b:
SARS-CoV-2 Spike:Fab 3D11 complex focused refinement
Method: single particle / : Asarnow D, Cheng Y

EMDB-22689:
Hedgehog receptor Patched (PTCH1) in complex with conformation selective nanobody TI23
Method: single particle / : Zhang Y, Bulkley DP

PDB-7k65:
Hedgehog receptor Patched (PTCH1) in complex with conformation selective nanobody TI23
Method: single particle / : Zhang Y, Bulkley DP, Liang J, Manglik A, Cheng Y, Beachy PA

EMDB-22972:
Cryo-EM structure of heavy chain mouse apoferritin
Method: single particle / : Sun M, Azumaya C

PDB-7kod:
Cryo-EM structure of heavy chain mouse apoferritin
Method: single particle / : Sun M, Azumaya C, Tse E, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA

EMDB-22907:
SARS-CoV-2 Spike bound to Nb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF

EMDB-22908:
SARS-CoV-2 Spike bound to Nb6 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22909:
SARS-CoV-2 Spike bound to Nb11 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22910:
SARS-CoV-2 Spike bound to mNb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF

EMDB-22911:
SARS-CoV-2 Spike bound to Nb11 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkk:
SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkl:
SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-21040:
Structure of the rat vesicular glutamate transporter 2 determined by single particle Cryo-EM
Method: single particle / : Li F, Finer-Moore J, Eriksen J, Cheng Y, Edwards R, Stroud R

EMDB-9111:
Structural basis for cholesterol transport-like activity of the Hedgehog receptor Patched
Method: single particle / : Zhang Y, Bulkley D

PDB-6mg8:
Structural basis for cholesterol transport-like activity of the Hedgehog receptor Patched
Method: single particle / : Zhang Y, Bulkley D, Xin Y, Roberts KJ, Asarnow DE, Sharma A, Myers BR, Cho W, Cheng Y, Beachy PA

EMDB-7786:
human PKD2 F604P mutant
Method: single particle / : Zheng W, Yang X

PDB-6d1w:
human PKD2 F604P mutant
Method: single particle / : Zheng W, Yang X, Bulkley D, Chen XZ, Cao E

EMDB-7095:
Cryo-EM structure of the TMEM16A calcium-activated chloride channel in nanodisc
Method: single particle / : Dang S, Feng S

EMDB-7096:
Cryo-EM structure of the TMEM16A calcium-activated chloride channel in LMNG
Method: single particle / : Dang S, Feng S

PDB-6bgi:
Cryo-EM structure of the TMEM16A calcium-activated chloride channel in nanodisc
Method: single particle / : Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbuhler K, Ye W, Qi J, Chen T, Craik CS, Jan YN, Minor Jr DL, Cheng Y, Jan LY

PDB-6bgj:
Cryo-EM structure of the TMEM16A calcium-activated chloride channel in LMNG
Method: single particle / : Dang S, Feng S, Tien J, Peters CJ, Bulkley D, Lolicato M, Zhao J, Zuberbuhler K, Ye W, Qi L, Chen T, Craik CS, Jan YN, Minor Jr DL, Cheng Y, Jan LY

EMDB-8702:
Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc
Method: single particle / : Jin P

PDB-5vkq:
Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc
Method: single particle / : Jin P, Bulkley D, Guo Y, Zhang W, Guo Z, Huynh W, Wu S, Meltzer S, Chen T, Jan LY, Jan YN, Cheng Y

EMDB-8354:
Cryo-EM structure of Polycystic Kidney Disease protein 2 (PKD2), residues 198-703
Method: single particle / : Shen PS, Yang X, DeCaen PG, Liu X, Bulkley D, Clapham DE, Cao E

EMDB-8355:
Cryo-EM structure of Polycystic Kidney Disease protein 2 (PKD2)
Method: single particle / : Shen PS, Yang X, DeCaen PG, Liu X, Bulkley D, Clapham DE, Cao E

EMDB-8356:
Cryo-EM structure of Polycystic Kidney Disease protein 2 (PKD2)
Method: single particle / : Shen PS, Yang X, DeCaen PG, Liu X, Bulkley D, Clapham DE, Cao E

PDB-5t4d:
Cryo-EM structure of Polycystic Kidney Disease protein 2 (PKD2), residues 198-703
Method: single particle / : Shen PS, Yang X, DeCaen PG, Liu X, Bulkley D, Clapham DE, Cao E

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more