[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 69 items for (author: brunner & d)

EMDB-52787:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256, local refinement
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52603:
CryoEM structure of the Themis:Grb2 complex with bound ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52604:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 1)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52605:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 2)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52606:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 3)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52607:
3D reconstruction of Themis:Grb2:ProMacrobody256 after 3D classification (Class 4)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52608:
CryoEM map of Themis bound to ProMacrobody 256
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52609:
3D reconstruction of Themis:ProMacrobody256 after 3D classification (Class 1)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-52610:
3D reconstruction of Themis:ProMacrobody256 after 3D classification (Class 2)
Method: single particle / : Clancy DM, Felix J, Bloch Y, Savvides SN

EMDB-53173:
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

PDB-9qhm:
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

EMDB-53174:
Cryo-EM structure of mouse TRPM3 alpha 2 in APO state
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

PDB-9qhn:
Cryo-EM structure of mouse TRPM3 alpha 2 in APO state
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

EMDB-53175:
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Primidone
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

PDB-9qho:
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Primidone
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

EMDB-53177:
Cryo-EM structure of mouse TRPM3 alpha 2 in with agonists CIM-0216 and Pregnenolone sulfate (PregS)
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

PDB-9qhq:
Cryo-EM structure of mouse TRPM3 alpha 2 in with agonists CIM-0216 and Pregnenolone sulfate (PregS)
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

EMDB-55737:
Cryo-EM composite structure of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

PDB-9t9u:
Cryo-EM composite structure of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

EMDB-55736:
Focused refinement map on N-terminus of mouse TRPM3 alpha 2 in complex with antagonist Ononetin
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

EMDB-53176:
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Isosakuranetin
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

PDB-9qhp:
Cryo-EM structure of mouse TRPM3 alpha 2 in complex with antagonist Isosakuranetin
Method: single particle / : Shkumatov AV, Schenck S, Brunner JD

EMDB-53246:
Consensus refinement: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homo dimers of Akirin-2. Focussed refinement
Method: single particle / : Brunner HL, Grundmann L, Haslelbach D

EMDB-53248:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on Importin-9 and Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53264:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on the alpha subunits, Ipo-9 and Ak2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53265:
Composite map: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-53266:
Binary complex of human Importin-9 with one homodimer of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qno:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on Importin-9 and Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qon:
Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2 - focussed refinement on the alpha subunits, Ipo-9 and Ak2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qoo:
Composite model: Ternary complex of the human 20S proteasome in complex with Importin-9 and two homodimers of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

PDB-9qop:
Binary complex of human Importin-9 with one homodimer of Akirin-2
Method: single particle / : Brunner HL, Grundmann L, David H

EMDB-52346:
Cryo-EM structure of mouse TMEM16F-YFP purified and plunged using MISO (microfluidic isolation)
Method: single particle / : De Gieter S, Eluru G, Schenck S, Stroobants A, Efremov RG, Brunner JD

PDB-9hqp:
Cryo-EM structure of mouse TMEM16F-YFP purified and plunged using MISO (microfluidic isolation)
Method: single particle / : De Gieter S, Eluru G, Schenck S, Stroobants A, Efremov RG, Brunner JD

EMDB-52333:
E. coli beta-galactosidase labeled with Chromeo P503 dye purified using MISO
Method: single particle / : Eluru G, De Gieter S, Stroobants A, Efremov RG

EMDB-52334:
E. coli beta-galactosidase labeled with Chromeo P503 dye purified using MISO from 1ug
Method: single particle / : Eluru G, De Gieter S, Stroobants A, Efremov RG

EMDB-52344:
Cryo-EM structure of bovine TMEM206
Method: single particle / : Brunner JD, Schenck S, De Gieter S

EMDB-52345:
Cryo-EM structure of bovine TMEM206-YFP purified and plunged using MISO (micro-purification)
Method: single particle / : De Gieter S, Eluru G, Schenck S, Stroobants A, Efremov RG, Brunner JD

EMDB-52486:
Cryo-EM structure of TRPC6 (complete particle) purified and plunged using MISO (micro-purification)
Method: single particle / : De Gieter S, Eluru G, Stroobants A, Shrestha B, Erbel P, Efremov RG

EMDB-52487:
Cryo-EM structure of TRPC6 (extra cellular domain) purified and plunged using MISO (micro-purification)
Method: single particle / : De Gieter S, Eluru G, Stroobants A, Shrestha B, Erbel P, Efremov RG

PDB-9hpl:
E. coli beta-galactosidase labeled with Chromeo P503 dye purified using MISO
Method: single particle / : Eluru G, De Gieter S, Stroobants A, Efremov RG

PDB-9hpm:
E. coli beta-galactosidase labeled with Chromeo P503 dye purified using MISO from 1ug
Method: single particle / : Eluru G, De Gieter S, Stroobants A, Efremov RG

PDB-9hqn:
Cryo-EM structure of bovine TMEM206
Method: single particle / : Brunner JD, Schenck S, De Gieter S

PDB-9hqo:
Cryo-EM structure of bovine TMEM206-YFP purified and plunged using MISO (micro-purification)
Method: single particle / : De Gieter S, Eluru G, Schenck S, Stroobants A, Efremov RG, Brunner JD

EMDB-50889:
Cryo-EM structure of native SV2A in complex with TeNT-Hc, gangliosides and Pro-Macrobody 5
Method: single particle / : Schenck S, Brunner JD

EMDB-50890:
Cryo-EM structure of native SV2A in complex with TeNT-Hc, gangliosides and Pro-Macrobody 5, focused refinement on TeNT-Hc and gangliosides
Method: single particle / : Schenck S, Brunner JD

EMDB-50891:
Cryo-EM structure of native SV2A in complex with TeNT-Hc, Pro-Macrobody 5 and Levetiracetam
Method: single particle / : Schenck S, Brunner JD

PDB-9fyq:
Cryo-EM structure of native SV2A in complex with TeNT-Hc, gangliosides and Pro-Macrobody 5
Method: single particle / : Schenck S, Brunner JD

PDB-9fyr:
Cryo-EM structure of native SV2A in complex with TeNT-Hc, Pro-Macrobody 5 and Levetiracetam
Method: single particle / : Schenck S, Brunner JD

EMDB-18194:
Cryo-electron tomogram of GEM2-labelled Mito-EGFP in HeLa cells
Method: electron tomography / : Fung HKH, Hayashi Y, Salo VT, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Mueller CW, Cuylen-Haering S, Mahamid J

EMDB-16303:
In situ subtomogram average of GEM2 particles in human cells
Method: subtomogram averaging / : Fung HKH, Hayashi Y, Salo VT, Babenko A, Zagoriy I, Brunner A, Ellenberg J, Mueller CW, Cuylen-Haering S, Mahamid J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more