[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 236 items for (author: briggs & jag)

EMDB-51847:
80S Ribosome Average for EMPIAR-11830
Method: subtomogram averaging / : Khavnekar S

EMDB-53278:
The structure of the COPI leaf bound to GOLPH3
Method: subtomogram averaging / : Taylor RJ, Tagiltsev G, Ciazynska KA, Briggs JAG

EMDB-53528:
Tomogram of a PSD95-containing glutamatergic synapse from 'ultra fresh' prepared mouse.
Method: electron tomography / : Peukes J, Frank R, Briggs JAG

EMDB-54246:
Subtomogram average of an ionotropic glutamate receptor within mammalian glutamatergic synapses
Method: subtomogram averaging / : Peukes J, Frank R, Briggs JAG

EMDB-19643:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19644:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19645:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19646:
Tomographic reconstruction of the follicle cell nuclear periphery from high pressure frozen, freeze substituted and resin embedded D. melanogaster egg chamber
Method: electron tomography / : Klumpe S, Hampoelz B, Ronchi P, Beck M, Plitzko J

EMDB-19647:
Tomographic reconstruction of nuclear copia VLP clusters in D. melanogaster ovarian somatic cells
Method: electron tomography / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-19648:
Tomogram of the nuclear periphery of a follicle cell from lift-out experiments on D. melanogaster egg chambers
Method: electron tomography / : Klumpe S, Beck F, Beck M, Plitzko JM

EMDB-19649:
In situ copia VLP cluster subtomogram averaging, C1-C1 contact map
Method: subtomogram averaging / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-19650:
In situ copia VLP cluster subtomogram averaging, C1-C5 contact map
Method: subtomogram averaging / : Klumpe S, Beck F, Plitzko JM

EMDB-19651:
In situ copia VLP cluster subtomogram averaging, C5-C5 contact map
Method: subtomogram averaging / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-19708:
The structure of the copia retrotransposon icosahedral capsid (T=9)
Method: subtomogram averaging / : Klumpe S, Beck F, Briggs JAG, Beck M, Plitzko JM

EMDB-52229:
Immature HIV-1 matrix
Method: single particle / : Stacey JCV, Hrebik D, Briggs JAG

EMDB-45833:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45834:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45835:
3A6 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45836:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45837:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-52221:
Mature HIV-1 matrix from WT virus particle
Method: single particle / : Stacey JCV, Hrebik D, Briggs JAG

EMDB-52222:
Mature HIV-1 matrix from MA-NC cleavage mutant
Method: single particle / : Stacey JCV, Hrebik D, Briggs JAG

EMDB-51769:
Mature HIV-1 matrix from MA-SP1 cleavage mutant
Method: single particle / : Stacey JCV, Hrebik D, Briggs JAG

EMDB-45863:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 3 closed RBDs
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45864:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 1 open RBD
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45865:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 3 closed RBDs
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45866:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Alpha (B.1.1.7) variant 1 open RBD
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45867:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Gamma (P.1) variant 3 closed RBDs
Method: single particle / : Ke Z, Kotecha A, Briggs JAG

EMDB-45868:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Delta (B.1.617.2) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG, Saphire EO

EMDB-45869:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: Mu (B.1.621) variant 3 closed RBDs
Method: single particle / : Ke Z, Briggs JAG, Saphire EO

EMDB-51789:
In situ clathrin subtomogram average from Chlamydomonas reinhardtii
Method: subtomogram averaging / : Tagiltsev G, Righetto RD, Khavnekar S, Kotecha A, Engel BD, Briggs JAG

EMDB-19024:
Structure of the PNMA2 capsid
Method: single particle / : Erlendsson S, Xu J, Shepherd JD, Briggs JAG

EMDB-19025:
Structure of the five-fold capsomer of the PNMA2 capsid
Method: single particle / : Erlendsson S, Xu J, Shepherd JD, Briggs JAG

EMDB-19026:
Structure of the three-fold capsomer of the PNMA2 capsid
Method: single particle / : Erlendsson S, Xu J, Shepherd JD, Briggs JAG

EMDB-19027:
Structure of the two-fold capsomer of the PNMA2 capsid
Method: single particle / : Erlendsson S, Xu J, Shepherd JD, Briggs JAG

EMDB-16698:
Subtomogram average of HIV-1 CA pentamer from capsid-like particles assembled with inositol hexakisphosphate
Method: subtomogram averaging / : Tan A, Briggs JAG, Dick RA

EMDB-16699:
Subtomogram average of HIV-1 CA hexamer from capsid-like particles assembled with inositol hexakisphosphate
Method: subtomogram averaging / : Tan A, Briggs JAG, Dick RA

EMDB-29772:
HIV-1 CA lattice bound to IP6; from capsid-like particles
Method: single particle / : Highland CM, Dick RA

EMDB-29773:
HIV-1 capsid lattice bound to IP6, pH 6.2
Method: single particle / : Highland CM, Dick RA

EMDB-29774:
HIV-1 CA lattice bound to IP6, pH 7.4
Method: single particle / : Highland CM, Dick RA

EMDB-29775:
HIV-1 capsid lattice bound to dNTPs
Method: single particle / : Highland CM, Dick RA

EMDB-29776:
HIV-1 capsid lattice bound to IP6 and Lenacapavir
Method: single particle / : Highland CM, Dick RA

EMDB-29777:
Defective HIV-1 CA pentamer in surrounding hexameric lattice
Method: single particle / : Highland CM, Dick RA

EMDB-16703:
HIV-1 mature capsid hexamer from CA-IP6 CLPs
Method: single particle / : Stacey JCV, Briggs JAG

EMDB-16704:
HIV-1 mature capsid pentamer from CA-IP6 CLPs
Method: single particle / : Stacey JCV, Briggs JAG

EMDB-16705:
HIV-1 mature capsid hexamer next to pentamer (type I) from CA-IP6 CLPs
Method: single particle / : Stacey JCV, Briggs JAG

EMDB-16706:
HIV-1 mature capsid hexamer from CA-IP6 CLPs, bound to Nup153 peptide
Method: single particle / : Stacey JCV, Briggs JAG

EMDB-16707:
HIV-1 mature capsid pentamer from CA-IP6 CLPs bound to Nup153 peptide
Method: single particle / : Stacey JCV, Briggs JAG

EMDB-16708:
HIV-1 mature capsid hexamer next to pentamer (type I) from CA-IP6 CLPs bound to Nup153 peptide.
Method: single particle / : Stacey JCV, Briggs JAG

EMDB-16709:
HIV-1 mature capsid hexamer from CA-IP6 CLPs, bound to CPSF6 peptide.
Method: single particle / : Stacey JCV, Briggs JAG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more