[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 923 items for (author: berger & f)

EMDB-44633:
Cryo-EM structure of apo NVL
Method: single particle / : Cruz VE, Erzberger JP

EMDB-44634:
Cryo-EM structure of NVL bound the the MM017 inhibitor
Method: single particle / : Cruz VE, Erzberger JP

EMDB-48818:
Low resolution cryo-EM reconstruction of the DY2 collagen mimetic fibrils
Method: single particle / : Kreutzberger MAB, Cole CC, Egelman EH, Hartgerink JD

EMDB-71585:
Negative stain EM map of EBV glycoprotein gH/gL in complex with glycoprotein gp42 and FAB ATX-42-1.1 open conformation
Method: single particle / : Lang K, Kher G, Chan CB, Pancera M

EMDB-71586:
Negative stain EM map of EBV glycoprotein gH/gL in complex with glycoprotein gp42 and FAB ATX-42-2 Open conformation
Method: single particle / : Lang K, Kher G, Chan CB, Pancera M

EMDB-71587:
Negative stain EM map of EBV glycoprotein gH/gL in complex with glycoprotein gp42 and FAB ATX-42-1.1 partially open conformation
Method: single particle / : Lang K, Kher G, Chan CB, Pancera M

EMDB-71588:
Negative stain EM map of EBV glycoprotein gH/gL in complex with glycoprotein gp42 and FAB ATX-42-2 closed conformation
Method: single particle / : Lang K, Kher G, Chan CB, Pancera M

EMDB-71589:
Negative stain EM map of EBV glycoprotein gH/gL in complex with glycoprotein gp42 and HLA-DR1 Beta chain
Method: single particle / : Lang K, Duy M, Pancera M

EMDB-71590:
Negative Stain EM map of EBV glycoprotein gp350 in complex with ATX-350-1 FAB and 72A1 FAB
Method: single particle / : Lang K, Pancera M

EMDB-71592:
Negative Stain EM map of EBV glycoprotein gp350 in complex with ATX-350-2 FAB
Method: single particle / : Lang K, Kher G, Aldridge NT, Pancera M

EMDB-71593:
Negative Stain EM map of EBV glycoprotein gp350 in complex with ATX-350-1 FAB
Method: single particle / : Lang K, Pancera M

EMDB-71594:
Negative Stain EM map of EBV glycoprotein gp350 in complex with 72A1 FAB
Method: single particle / : Lang K, Pancera M

EMDB-72129:
Negative Stain EM map of KSHV glycoprotein gH and gL
Method: single particle / : Kher G, Aldridge NT, Lang K, Pancera M

EMDB-72130:
Negative Stain EM map of KSHV glycoprotein gHgL in complex with MLKH1 FAB
Method: single particle / : Kher G, Aldridge NT, Lang K, Pancera M

EMDB-72131:
Negative Stain EM map of KSHV glycoprotein gHgL in complex with MLKH5 FAB
Method: single particle / : Kher G, Aldridge NT, Lang K, Pancera M

EMDB-72132:
Negative Stain EM map of KSHV glycoprotein gHgL in complex with MLKH5, MLKH10 and MLKH3 FABs.
Method: single particle / : Lang K, Aldridge NT, Pancera M

EMDB-72133:
Negative Stain EM map of KSHV glycoprotein gHgL in complex with MLKH5, MLKH10 and MLKH6 FABs
Method: single particle / : Lang K, Aldridge NT, Pancera M

EMDB-72525:
Negative Stain EM map of KSHV glycoprotein gHgL in complex with MLKH5 , MLKH10 and MLKH12 FABs.
Method: single particle / : Lang K, Aldridge N, Pancera M

EMDB-73789:
Cryo-EM structure of KSHV glycoprotein gHgL in complex with MLKH3 and MLKH10 FABs
Method: single particle / : Lang K, Aldridge N, Pancera M

PDB-9z3q:
Cryo-EM structure of KSHV glycoprotein gHgL in complex with MLKH3 and MLKH10 FABs
Method: single particle / : Lang K, Aldridge N, Pancera M

EMDB-53068:
Cryo-EM map of P. furiosus 70S grown at 95 degrees
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53069:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53070:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53071:
Cryo-EM map of P. furiosus 70S grown at 95 degC, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53072:
Consensus cryo-EM map of P furiosus 70S grown at 102degC
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53073:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53074:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53076:
Cryo-EM map of P. furiosus 70S grown at 102 degC, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53077:
Consensus cryo-EM map of P. furiosus 70S in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53078:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the lsu
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53079:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the ssu body
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53080:
Cryo-EM map of P. furiosus 70S in RsmB deleted strain, focused on the ssu head
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-49646:
Magnesium ions-bound closed-state cryo-EM structure of human TRPV6 in cNW11 nanodiscs
Method: single particle / : Neuberger A, Sobolevsky AI

PDB-9nq9:
Magnesium ions-bound closed-state cryo-EM structure of human TRPV6 in cNW11 nanodiscs
Method: single particle / : Neuberger A, Sobolevsky AI

EMDB-54584:
Arabidopsis thaliana TPLATE complex negative stain EM map
Method: single particle / : Kraus JM, Van Damme D, Pleskot R, Neubergerova M

EMDB-53098:
Structure of P. furiosus 70S ribosome grown at 95 degC
Method: single particle / : Matzov D, Georgeson G, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53099:
Structure of P. furiosus 70S ribosome grown at 102deg
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-53100:
Structure of P. furiosus 70S ribosome in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf4:
Structure of P. furiosus 70S ribosome grown at 95 degC
Method: single particle / : Matzov D, Georgeson G, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf5:
Structure of P. furiosus 70S ribosome grown at 102deg
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

PDB-9qf6:
Structure of P. furiosus 70S ribosome in RsmB deleted strain
Method: single particle / : Matzov D, Georgeson J, Westhof E, Schwartz S, Shalev-Benami M

EMDB-71559:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

PDB-9pee:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-52956:
Structure of Cystathionine gamma-lyase with ZHAWOC24000
Method: single particle / : Uchikawa E, Nazi S, So A, Driss E

EMDB-52957:
Structure of Cystathionine gamma-lyase
Method: single particle / : Uchikawa E, Nasi S, So A, Driss A

EMDB-49737:
Subtomogram Average of in situ Lipoprotein Lipase Filament
Method: subtomogram averaging / : Gunn KH, Wheless A, Neher SB

EMDB-49738:
Lipoprotein Lipase Helical Filament with 11 nm diameter
Method: helical / : Gunn KH, Wheless A, Neher SB

PDB-9nrn:
Lipoprotein Lipase Helical Filament with 11 nm diameter
Method: helical / : Gunn KH, Wheless A, Neher SB

EMDB-47791:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU1-L0R8F8-mt-ACP complex (without uL16m), State B1 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9e9c:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU1-L0R8F8-mt-ACP complex (without uL16m), State B1 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more