[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 664 items for (author: berger & f)

EMDB-18136:
ATP-bound IstB in complex to duplex DNA
Method: single particle / : de la Gandara A, Spinola-Amilibia M, Araujo-Bazan L, Nunez-Ramirez R, Berger JM, Arias-Palomo E

EMDB-18144:
IstA-IstB(E167Q) Strand Transfer Complex
Method: single particle / : de la Gandara A, Spinola-Amilibia M, Araujo-Bazan L, Nunez-Ramirez R, Berger JM, Arias-Palomo E

PDB-8q3w:
ATP-bound IstB in complex to duplex DNA
Method: single particle / : de la Gandara A, Spinola-Amilibia M, Araujo-Bazan L, Nunez-Ramirez R, Berger JM, Arias-Palomo E

PDB-8q4d:
IstA-IstB(E167Q) Strand Transfer Complex
Method: single particle / : de la Gandara A, Spinola-Amilibia M, Araujo-Bazan L, Nunez-Ramirez R, Berger JM, Arias-Palomo E

EMDB-50580:
SOLIST cryo-tomogram of native left ventricle mouse heart muscle #1
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-50582:
SOLIST native mouse heart muscle tomogram #2
Method: electron tomography / : Erdmann PS, Nguyen HTD, Perone G, Klena N, Vazzana R, Kaluthantrige Don F, Silva M, Sorrentino S, Swuec P, Leroux F, Kalebic N, Coscia F

EMDB-16904:
Structure of the MlaCD complex (1:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-16913:
Structure of the MlaCD complex (2:6 stoichiometry)
Method: single particle / : Wotherspoon P, Bui S, Sridhar P, Bergeron JRC, Knowles TJ

EMDB-17730:
masked refinement giving rise to better defined protruding densities of the potential macrodomain outside the AUD helical assemblies.
Method: helical / : Reguera J, Hons M, Zimberger C, Ptchelkine D, Jones R, Desfosses A

EMDB-36083:
Cryo-EM structure of DDM1-nucleosome complex
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-36084:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-36085:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j90:
Cryo-EM structure of DDM1-nucleosome complex
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j91:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana histones
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

PDB-8j92:
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W
Method: single particle / : Osakabe A, Takizawa Y, Horikoshi N, Hatazawa S, Berger F, Kurumizaka H, Kakutani T

EMDB-50358:
In vitro-induced genome-releasing intermediate of Rhodobacter microvirus Ebor computed with C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50296:
70S Escherichia coli ribosome with P-site initiatior tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-9fbv:
70S Escherichia coli ribosome with P-site initiatior tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-50356:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50357:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50359:
Rhodobacter microvirus Ebor attached to B10 host cell reconstructed by single particle analysis with applied C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50360:
Rhodobacter microvirus Ebor attached to the outer membrane vesicle
Method: subtomogram averaging / : Bardy P, Blaza JN, Jenkins HT, Nicholas TR, Konig HC, Alim NTB, Hart SJ, Turkenburg JP, Fogg PCM, Beatty JT, Antson AA

EMDB-50361:
Rhodobacter microvirus Ebor attached to the host cell reconstructed by subtomogram averaging
Method: subtomogram averaging / : Bardy P, Traore DAK, Blaza JN, Jenkins HT, Nicholas TR, Hart SJ, Turkenburg JP, Fogg PCM, Antson AA

PDB-9ffg:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

PDB-9ffh:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-16929:
Cryo-EM structure of Pyrococcus furiosus transcription elongation complex bound to Spt4/5
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

EMDB-17130:
Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase open clamp conformation
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

EMDB-17366:
Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation with Spt4/5
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

EMDB-19033:
Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

PDB-8oki:
Cryo-EM structure of Pyrococcus furiosus transcription elongation complex bound to Spt4/5
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

PDB-8orq:
Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase open clamp conformation
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

PDB-8p2i:
Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation with Spt4/5
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

PDB-8rbo:
Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase contracted clamp conformation
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

EMDB-16809:
Cryo-EM structure of Pyrococcus furiosus transcription elongation complex
Method: single particle / : Tarau DM, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

PDB-8cro:
Cryo-EM structure of Pyrococcus furiosus transcription elongation complex
Method: single particle / : Tarau DM, Grunberger F, Reichelt R, Heiss FB, Pilsl M, Hausner W, Engel C, Grohmann D

EMDB-42994:
Apo-state cryo-EM structure of human TRPV3 in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

EMDB-42995:
Open-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

EMDB-42996:
Inactivated-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

EMDB-42997:
Open-state cryo-EM structure of human TRPV3 in presence of 2-APB in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

EMDB-42998:
Inactivated-state cryo-EM structure of human TRPV3 in presence of 2-APB in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

PDB-8v6k:
Apo-state cryo-EM structure of human TRPV3 in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

PDB-8v6l:
Open-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

PDB-8v6m:
Inactivated-state cryo-EM structure of human TRPV3 in presence of tetrahydrocannabivarin (THCV) in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

PDB-8v6n:
Open-state cryo-EM structure of human TRPV3 in presence of 2-APB in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

PDB-8v6o:
Inactivated-state cryo-EM structure of human TRPV3 in presence of 2-APB in cNW30 nanodiscs
Method: single particle / : Nadezhdin KD, Neuberger A, Sobolevsky AI

EMDB-18214:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18216:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18217:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused on E2-like density
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18218:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused dimeric core
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18220:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 CPH domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more