[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 79 items for (author: beeby & m)

EMDB-51486:
Salmonella cap-filament complex
Method: single particle / : Qin K, Einenkel R, Erhardt M, Bergeron JRC

EMDB-51493:
Salmonella hook-filament junction complex
Method: single particle / : Qin K, Einenkel R, Erhardt E, Bergeron JR

EMDB-51555:
Sub-tomogram average of Salmonella flagellar tip
Method: electron tomography / : Al-Otaibi NS, Mann D, Bergeron JRC

EMDB-51557:
Campylobacter hook-filament junction-cap complex
Method: single particle / : Qin K, Gonzalez-Rodriguez N, Shmakova E, Beeby M, Bergeron JRC

PDB-9gnz:
Salmonella cap-filament complex
Method: single particle / : Qin K, Einenkel R, Erhardt M, Bergeron JRC

PDB-9go6:
Salmonella hook-filament junction complex
Method: single particle / : Qin K, Einenkel R, Erhardt E, Bergeron JR

PDB-9gsx:
Campylobacter hook-filament junction-cap complex
Method: single particle / : Qin K, Gonzalez-Rodriguez N, Shmakova E, Beeby M, Bergeron JRC

PDB-9hmf:
Periplasmic scaffold of the Campylobacter jejuni flagellar motor (alpha carbon trace)
Method: single particle / : Drobnic T, Beeby M

EMDB-17415:
Campylobacter jejuni flagellar motor, pflC deletion
Method: subtomogram averaging / : Drobnic T, Alzheimer M, Svensson S, Sharma CS, Beeby M

EMDB-17416:
Campylobacter jejuni flagellar motor, pflD deletion
Method: subtomogram averaging / : Drobnic T, Henderson LD, Alzheimer M, Svensson S, Sharma CM, Beeby M

EMDB-17417:
Campylobacter jejuni flagellar motor, truncated PflA (d16-168)
Method: subtomogram averaging / : Drobnic T, Nans A, Rosenthal PB, Beeby M

EMDB-17419:
Campylobacter jejuni flagellar motor, FlgQ-mCherry fusion
Method: subtomogram averaging / : Drobnic T, Hendrixson DR, Beeby M

EMDB-19642:
Campylobacter jejuni bacterial flagellar C-ring
Method: subtomogram averaging / : Beeby M

EMDB-17769:
Subtomogram average of the Campylobacter jejuni motor with basal disk genes, flgPQ, expressed at very low level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17770:
Subtomogram average of the Campylobacter jejuni flagellar motor with the basal disk genes, flgPQ, expressed at low level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17771:
Subtomogram average of the Campylobacter jejuni flagellar motor with the basal disk genes, flgPQ, expressed at medium level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17772:
Subtomogram average of the Campylobacter jejuni motor with the basal disk genes, flgPQ, expressed at high level
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17773:
Subtomogram average of the Campylobacter jejuni flgP S69A E157A K159A (flgP-AAA) flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17774:
Subtomogram average of the Campylobacter jejuni flgP Del18-62 flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17775:
Subtomogram average of the Campylobacter jejuni flgPQ deletion flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-17776:
Subtomogram average of the Campylobacter jejuni DflgPQ D0661 DkpsD DpglAB flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-18274:
Subtomogram average of the Campylobacter jejuni FlgP-Lpp55 flagellar motor
Method: subtomogram averaging / : Cohen EJ, Beeby M

EMDB-16723:
Wild-type Campylobacter jejuni flagellar motor, in situ
Method: single particle / : Drobnic T, Cohen EJ, Calcraft T, Singh NK, Nans A, Rosenthal PB, Beeby M

EMDB-16724:
Periplasmic scaffold of the Campylobacter jejuni flagellar motor
Method: single particle / : Drobnic T, Cohen EJ, Singh NK, Umrekar TR, Nans A, Rosenthal PB, Beeby M

EMDB-14504:
Three-dimensional structure of myosin binding protein C in rat cardiac muscle
Method: subtomogram averaging / : Luther PK, Morris EP, Huang X, Jun L

EMDB-25702:
Flagellar motor of Hylemonella gracilis
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-25703:
Flagellar MS-complex of Helicobacter pylori delta fliM fliP*
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-25704:
Flagellar MS-complex of Helicobacter pylori fliP*
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-25705:
Flagellar MS-complex of Helicobacter pylori delta fliQ fliP*
Method: subtomogram averaging / : Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Subramanian P, Ortega DR, Chang YW, Beeby M, Shaffer LS, Jensen GJ

EMDB-13428:
Pfu sArlG (PF0333, N-d31-ArlG)
Method: single particle / : Umrekar TR, Winterborn YB, Sivabalasarma S, Brantl J, Albers SV, Beeby M

EMDB-11928:
SctV (SsaV) cytoplasmic domain
Method: single particle / : Matthews-Palmer TRS, Gonzalez-Rodriguez N, Calcraft T, Lagercrantz S, Zachs T

PDB-7awa:
SctV (SsaV) cytoplasmic domain
Method: single particle / : Matthews-Palmer TRS, Gonzalez-Rodriguez N, Calcraft T, Lagercrantz S, Zachs T, Yu XJ, Grabe G, Holden D, Nans A, Rosenthal P, Rouse S, Beeby M

EMDB-10000:
Lateral flagellar motor from Plesiomonas shigelloidea
Method: subtomogram averaging / : Ferreira JL, Beeby M

EMDB-4999:
Flagellar motor from Bordetella bronchiseptica
Method: subtomogram averaging / : Ferreira JL, Beeby M

EMDB-11240:
Cryo-EM structure of the E.coli HTL-BAm complex
Method: single particle / : Alvira S, Collinson S

EMDB-11059:
ATP-dependent partner switch links flagellar C-ring assembly with gene expression
Method: subtomogram averaging / : Blagotinsek V, Schwan M, Steinchen W, Mrusek D, Hook J, Rossmann FM, Freibert SA, Kressler D, Beeby M, Thormann KM, Bange G

EMDB-11060:
Flagellar motor of Shewanella putrefaciens in situ, flhG deletion
Method: subtomogram averaging / : Blagotinsek V, Schwan M, Steinchen W, Mrusek D, Hook J, Rossmann FM, Freibert SA, Kressler D, Beeby M, Thormann KM, Bange G

EMDB-10943:
In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog
Method: subtomogram averaging / : Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M

EMDB-10945:
In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog
Method: subtomogram averaging / : Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M

EMDB-10949:
In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog
Method: subtomogram averaging / : Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M

EMDB-10950:
In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog
Method: subtomogram averaging / : Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M

EMDB-10955:
In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog
Method: subtomogram averaging / : Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M

EMDB-10956:
In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog
Method: subtomogram averaging / : Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M

EMDB-10957:
In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog
Method: subtomogram averaging / : Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M

EMDB-10341:
Campylobacter jejuni fliN deletion bacterial flagella motor
Method: subtomogram averaging / : Henderson LD, Beeby M

EMDB-10342:
Campylobacter jejuni fliY deletion bacterial flagella motor
Method: subtomogram averaging / : Henderson LD, Beeby M

EMDB-10343:
Campylobacter jejuni fliM deletion bacterial flagella motor
Method: subtomogram averaging / : Henderson LD, Beeby M

EMDB-10345:
Campylobacter jejuni fliMY deletion bacterial flagella motor
Method: subtomogram averaging / : Henderson LD, Beeby M

EMDB-10454:
Campylobacter jejuni fliH deletion flagellar motor
Method: subtomogram averaging / : Matthews-Palmer T, Beeby M

EMDB-10455:
Campylobacter jejuni fliH deletion, fliI knockout flagellar motor
Method: subtomogram averaging / : Matthews-Palmer T, Beeby M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more