[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 161 items for (author: barford & d)

EMDB-55755:
Structure of the human inner kinetochore CCAN bound to a 3' CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-55756:
Structure of the human inner kinetochore CCAN bound to a 5' CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-55757:
Structure of the human inner kinetochore CCAN bound to DNA
Method: single particle / : Yu C, Muir KW, Barford D

EMDB-55758:
Structure of the human inner kinetochore CCAN bound to a mono-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-55759:
Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-56612:
Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome, consensus map
Method: single particle / : Yu C, Barford D

EMDB-56683:
Structure of the human inner kinetochore CCAN and CENP-C bound to DNA
Method: single particle / : Yu C, Barford D

PDB-28op:
Structure of the human inner kinetochore CCAN and CENP-C bound to DNA
Method: single particle / : Yu C, Barford D

PDB-9taw:
Structure of the human inner kinetochore CCAN bound to DNA
Method: single particle / : Yu C, Muir KW, Barford D

PDB-9tax:
Structure of the human inner kinetochore CCAN bound to a mono-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

PDB-9tay:
Structure of the human inner kinetochore CCAN bound to a di-CENP-A nucleosome
Method: single particle / : Yu C, Barford D

EMDB-54576:
Consensus cryo-EM map of the Saccharomyces cerevisiae KMN junction complex lacking the Mis12c(Mtw1c) head 2 domain
Method: single particle / : Turner NN, Barford DB

EMDB-54577:
Mutlbody refinement cryo-EM density map of the base of the Saccharomyces cerevisiae KMN junction complex
Method: single particle / : Turner NN, Barford DB

EMDB-54578:
Multibody refinement cryo-EM density map of the apex of the Saccharomyces cerevisiae KMN junction complex
Method: single particle / : Turner NN, Barford DB

EMDB-54579:
Composite cryo-EM density map of the Saccharomyces cerevisiae KMN junction complex lacking the Mis12c(Mtw1c) head 2 domain
Method: single particle / : Turner NN, Barford D

EMDB-54586:
Multibody refinement cryo-EM density map of the base of the Saccharomyces cerevisiae KMN junction complex with Mis12c(Mtw1c) head 2 domain resolved
Method: single particle / : Turner NN, Barford D

EMDB-54602:
Cryo-EM structure of the Saccharomyces cerevisiae KMN junction complex containing the Mis12c(Mtw1c) head 2 domain
Method: single particle / : Turner NN, Barford D

PDB-9s4q:
Cryo-EM structure of the Saccharomyces cerevisiae KMN junction complex lacking the Mis12c(Mtw1c) head 2 domain
Method: single particle / : Turner NN, Barford D

PDB-9s53:
Cryo-EM structure of the base of the Saccharomyces cerevisiae KMN junction complex containing the Mis12c(Mtw1c) head 2 domain
Method: single particle / : Turner NN, Barford D

PDB-9s5n:
Cryo-EM structure of the Saccharomyces cerevisiae KMN junction complex containing the Mis12c(Mtw1c) head 2 domain
Method: single particle / : Turner NN, Barford D

EMDB-51190:
High-resolution structure of the Anaphase-promoting complex/cyclosome (APC/C) bound to co-activator Cdh1
Method: single particle / : Hoefler A, Yu J, Chang L, Zhang Z, Yang J, Boland A, Barford D

PDB-9gaw:
High-resolution structure of the Anaphase-promoting complex/cyclosome (APC/C) bound to co-activator Cdh1
Method: single particle / : Hoefler A, Yu J, Chang L, Zhang Z, Yang J, Boland A, Barford D

EMDB-51070:
Focused refined map of the Anaphase-promoting complex/cyclosome (APC/C) with mask 3
Method: single particle / : Hoefler A, Yu J, Chang L, Zhang Z, Yang J, Boland A, Barford D

EMDB-18664:
Structure of the native microtubule lattice nucleated from the yeast spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

EMDB-18665:
Structure of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

EMDB-18666:
Structure of the y-Tubulin Small Complex (yTuSC) as part of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

PDB-8qv0:
Structure of the native microtubule lattice nucleated from the yeast spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

PDB-8qv2:
Structure of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

PDB-8qv3:
Structure of the y-Tubulin Small Complex (yTuSC) as part of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Method: subtomogram averaging / : Dendooven T, Yatskevich S, Burt A, Bellini D, Kilmartin J, Barford D

EMDB-18304:
Outer kinetochore Ndc80-Dam1 alpha/beta-tubulin complex
Method: single particle / : Muir KW, Barford D

PDB-8qau:
Outer kinetochore Ndc80-Dam1 alpha/beta-tubulin complex
Method: single particle / : Muir KW, Barford D

EMDB-17814:
Structure of the human outer kinetochore KMN network complex
Method: single particle / : Yatskevich S, Barford D

PDB-8ppr:
Structure of the human outer kinetochore KMN network complex
Method: single particle / : Yatskevich S, Barford D

EMDB-19711:
Cryo-EM structure of the Anaphase-promoting complex/cyclosome (APC/C) bound to co-activator Cdh1 at 3.2 Angstrom resolution
Method: single particle / : Hoefler A, Yu J, Chang L, Zhang Z, Yang J, Boland A, Barford D

EMDB-18485:
Ndc80c microtubule complex
Method: single particle / : Muir KW, Barford D

EMDB-18246:
Outer kinetochore Dam1 protomer dimer Ndc80-Nuf2 coiled-coil complex
Method: single particle / : Muir KW, Barford D

EMDB-18247:
Outer kinetochore Dam1 protomer monomer Ndc80-Nuf2 coiled-coil complex
Method: single particle / : Muir KW, Barford D

PDB-8q84:
Outer kinetochore Dam1 protomer dimer Ndc80-Nuf2 coiled-coil complex
Method: single particle / : Muir KW, Barford D

PDB-8q85:
Outer kinetochore Dam1 protomer monomer Ndc80-Nuf2 coiled-coil complex
Method: single particle / : Muir KW, Barford D

EMDB-17224:
Cryo-EM structure of CBF1-CCAN bound topologically to centromeric DNA
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

EMDB-17225:
Cryo-EM structure of yeast CENP-OPQU+ bound to the CENP-A N-terminus
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S

EMDB-17226:
Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

EMDB-17227:
Cryo-EM structure of the yeast Inner kinetochore bound to a CENP-A nucleosome.
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

EMDB-17368:
Multibody map of the CENP-A nucleosome as part of the inner kinetochore
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

EMDB-17371:
Multibody map of CCAN(Topo) bound to CON3 DNA as part of the Inner kinetochore.
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

EMDB-17372:
Multibody map of CCAN(Non-Topo) bound to C0N3 DNA as part of the inner kinetochore.
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

EMDB-17374:
Multibody map of CBF3:CENP-HIK as part of the inner kinetochore
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

EMDB-17376:
Consensus map of the yeast inner kinetochore
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

PDB-8ovw:
Cryo-EM structure of CBF1-CCAN bound topologically to centromeric DNA
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D

PDB-8ovx:
Cryo-EM structure of yeast CENP-OPQU+ bound to the CENP-A N-terminus
Method: single particle / : Dendooven TD, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more