[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 97 items for (author: baradaran & r)

PDB-9xfk:
In situ structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

PDB-9xfl:
In vitro structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-63669:
Consensus map of human UHRF1 bound to mononucleosome with hemimethylated DNA at superhelical location -6.2.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63670:
The focused refinement map of the TTD-PHD domain of UHRF1 bound to a mononucleosome with hemimethylated DNA at superhelical location -6.2.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63671:
The SRA domain of human UHRF1 bound to a mononucleosome with hemimethylated DNA at superhelical location -6.2.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63672:
The RING domain of human UHRF1 bound to a mononucleosome in its pre-active state.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63673:
Human UHRF1 bound to a mononucleosome with hemimethylated DNA at superhelical location -5.6.
Method: single particle / : Naschberger A, Baradarn R

EMDB-63674:
Human UHRF1 bound to a mononucleosome with hemimethylation at superhelical location -6.2 and a Histone H3K9me3 methylation mark.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63675:
Human UHRF1 bound to a mononucleosome with a hemimethylation site in the linker DNA.
Method: single particle / : Naschberger A, Baradaran R

EMDB-63676:
UHRF1 bound to a mononucleosome in its pre-active state, with the RING domain bound to the SRA domain.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

EMDB-63677:
The activated state of human UHRF1 bound to a mononucleosome, with the finger loop ordered and linker 4 disordered.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

PDB-9m76:
UHRF1 bound to a mononucleosome in its pre-active state, with the RING domain bound to the SRA domain.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

PDB-9m77:
The activated state of human UHRF1 bound to a mononucleosome, with the finger loop ordered and linker 4 disordered.
Method: single particle / : Naschberger A, Baradaran R, Sayed A, Fischle W

EMDB-66639:
In situ structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-66640:
In situ structure of bacterial 50S ribosomes (CP)
Method: single particle / : Wu F, Naschberger A

EMDB-66736:
In vitro structure of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-66749:
In vitro structure of bacterial 50S ribosomes(CP)
Method: single particle / : Wu F, Naschberger A

EMDB-66841:
Plunge frozen map of bacterial 50S ribosomes
Method: single particle / : Wu F, Naschberger A

EMDB-19049:
Cryo-EM structure of hexameric BTB domain of Drosophila CG6765 protein
Method: single particle / : Bonchuk AN, Naschberger A, Baradaran R

PDB-8rc6:
Cryo-EM structure of hexameric BTB domain of Drosophila CG6765 protein
Method: single particle / : Bonchuk AN, Naschberger A, Baradaran R

EMDB-16379:
Active state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16380:
Resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16381:
Resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma-2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16382:
Transmembrane domain of resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma 2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16390:
Transmembrane domain of active state homomeric GluA1 AMPA receptor in tandem with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-16391:
Transmembrane domain of resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

EMDB-17392:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I, Cais O

EMDB-17393:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I, Cais O

EMDB-17394:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 1
Method: single particle / : Zhang D, Krieger J, Yamashita K, Greger I

EMDB-17395:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Greger IH

EMDB-17396:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger IH

EMDB-17397:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 4
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

EMDB-17398:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

EMDB-17399:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

EMDB-17400:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

EMDB-17692:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger IH

PDB-8c1p:
Active state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c1q:
Resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c1r:
Resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma-2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c1s:
Transmembrane domain of resting state homomeric GluA2 F231A mutant AMPA receptor in complex with TARP gamma 2
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c2h:
Transmembrane domain of active state homomeric GluA1 AMPA receptor in tandem with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8c2i:
Transmembrane domain of resting state homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Method: single particle / : Zhang D, Ivica J, Krieger JM, Ho H, Yamashita K, Cais O, Greger I

PDB-8p3q:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

PDB-8p3s:
Homomeric GluA2 flip R/G-unedited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

PDB-8p3t:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 1
Method: single particle / : Zhang D, Krieger J, Yamashita K, Greger I

PDB-8p3u:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 2
Method: single particle / : Zhang D, Krieger JM, Greger IH

PDB-8p3v:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 3
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger IH

PDB-8p3w:
Homomeric GluA1 in tandem with TARP gamma-3, desensitized conformation 4
Method: single particle / : Zhang D, Krieger JM, Yamashita K, Greger I

PDB-8p3x:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 1
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

PDB-8p3y:
Homomeric GluA2 flip R/G-edited Q/R-edited F231A mutant in tandem with TARP gamma-2, desensitized conformation 3
Method: single particle / : Krieger JM, Zhang D, Yamashita K, Greger IH

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more