[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 49 items for (author: arimura & y)

EMDB-42594:
MagIC-cryo-EM of H1.8-GFP nucleosome isolated from Xenopus egg extract (interphase and metaphase data are mixed)
Method: single particle / : Arimura Y, Funabiki H

EMDB-42596:
MagIC-cryo-EM of the H1.8-GFP nucleosome formed in the Xenopus egg extract interphase chromosomes
Method: single particle / : Arimura Y, Funabiki H

EMDB-42597:
MagIC-cryo-EM of the H1.8-GFP nucleosome formed in the Xenopus egg extract metaphase chromosomes
Method: single particle / : Arimura Y, Funabiki H

EMDB-42598:
MagIC-cryo-EM of the Xenopus H1.8-GFP nucleosome reconstituted in vitro
Method: single particle / : Arimura Y, Funabiki H

EMDB-42599:
Nucleosome in polynucleosome attached on magnetic beads
Method: single particle / : Arimura Y, Funabiki H

EMDB-24847:
Locally refined protomer structure of native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

EMDB-24848:
Native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

EMDB-24849:
Intermediate-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

PDB-7s62:
Locally refined protomer structure of native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

PDB-7s63:
Native-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

PDB-7s64:
Intermediate-form oocyte/egg Alpha-2-Macroglobulin (A2Moo) tetramer
Method: single particle / : Arimura Y, Funabiki H

EMDB-22790:
Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22791:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22792:
H1.8 bound nucleosome isolated from metaphase chromosome in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22793:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (oligo fraction) (unbiased reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22794:
Alpha2-macroglobulin family protein isolated from interphase chromosome formed in Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

EMDB-22795:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction) (unbiased reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22796:
Alpha2-macroglobulin family protein isolated from metaphase chromosome formed in Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

EMDB-22797:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (mono fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22798:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (di fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22800:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (mono fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-22801:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (di fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23819:
Nucleosome isolated from the interphase chromosome (oligo fraction, egg extract lot 2)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23820:
Nucleosome isolated from the interphase chromosome (oligo fraction, egg extract lot 2, simultaneous structures reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23821:
Nucleosome isolated from the metaphase chromosome (oligo fraction, egg extract lot 2)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23822:
Nucleosome isolated from the metaphase chromosome (oligo fraction, egg extract lot 2, simultaneous structures reconstruction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-23823:
Closed linker DNA nucleosome reconstituted with GUB DNA
Method: single particle / : Arimura Y, Funabiki H

EMDB-23824:
Open linker DNA nucleosome reconstituted with GUB DNA
Method: single particle / : Arimura Y, Funabiki H

EMDB-23826:
Nucleosome isolated from interphase chromosome formed in Xenopus egg extract (crosslinked after MNase, egg extract lot 2)
Method: single particle / : Arimura Y, Funabiki H

PDB-7kbd:
Nucleosome in interphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

PDB-7kbe:
Nucleosome isolated from metaphase chromosome formed in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

PDB-7kbf:
H1.8 bound nucleosome isolated from metaphase chromosome in Xenopus egg extract (oligo fraction)
Method: single particle / : Arimura Y, Funabiki H

EMDB-30240:
The cryo-EM density map of CENP-A nucleosome in complex with CENP-C C-terminal domain
Method: single particle / : Ariyoshi M, Makino F

EMDB-30241:
The cryo-EM density map of CENP-A nucleosome in complex with asymmetric CENP-C C-terminal domain and CENP-N N-terminal domain
Method: single particle / : Ariyoshi M, Makino F

EMDB-30551:
Cryo-EM structure of SET8-nucleosome complex
Method: single particle / : Ho CH, Takizawa Y

EMDB-30552:
Cryo-EM structure of SET8-CENP-A-nucleosome complex
Method: single particle / : Ho CH, Takizawa Y

PDB-7d1z:
Cryo-EM structure of SET8-nucleosome complex
Method: single particle / : Ho CH, Takizawa Y, Kobayashi W, Arimura Y, Kurumizaka H

PDB-7d20:
Cryo-EM structure of SET8-CENP-A-nucleosome complex
Method: single particle / : Ho CH, Takizawa Y, Kobayashi W, Arimura Y, Kurumizaka H

EMDB-30237:
The cryo-EM structure of CENP-A nucleosome in complex with CENP-C peptide and CENP-N N-terminal domain
Method: single particle / : Ariyoshi M, Makino F

EMDB-30239:
The cryo-EM structure of CENP-A nucleosome in complex with the phosphorylated CENP-C
Method: single particle / : Ariyoshi M, Makino F

PDB-7bxt:
The cryo-EM structure of CENP-A nucleosome in complex with CENP-C peptide and CENP-N N-terminal domain
Method: single particle / : Ariyoshi M, Makino F, Fukagawa T

PDB-7by0:
The cryo-EM structure of CENP-A nucleosome in complex with the phosphorylated CENP-C
Method: single particle / : Ariyoshi M, Makino F, Fukagawa T

EMDB-0768:
H3-CENP-A-H3 tri-nucleosome with the 22 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0769:
H3-CENP-A-H3 tri-nucleosome with the 30 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0770:
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA, Class1
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0771:
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA, Class2
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

EMDB-0772:
H3-H3-H3 tri-nucleosome with the 30 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Ohi M, Wolf M, Kurumizaka H

PDB-6l49:
H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Matsunami H, Ohi M, Wolf M, Kurumizaka H

PDB-6l4a:
H3-H3-H3 tri-nucleosome with the 22 base-pair linker DNA
Method: single particle / : Takizawa Y, Ho CH, Tachiwana H, Matsunami H, Ohi M, Wolf M, Kurumizaka H

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more