[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 16,301 items for (author: ad & o)

EMDB-55083:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
Method: single particle / : Rajan KS, Yonath A

EMDB-55091:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
Method: single particle / : Rajan KS, Yonath A

PDB-9spf:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING N1-METHYLPSEUDOURIDINE
Method: single particle / : Rajan KS, Yonath A

PDB-9spi:
CRYO-EM STRUCTURE OF HUMAN 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA CONTAINING URIDINE
Method: single particle / : Rajan KS, Yonath A

EMDB-54428:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54446:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 2.8A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54907:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3.3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-54908:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 4.2A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9s0z:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9s1e:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 2.8A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9shp:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 3.3A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

PDB-9shq:
Cryo-EM structure of the endogeneous MIWI in complex with pachytene piRNA at 4.2A
Method: single particle / : Raad NG, Fernandez-Rodriguez C, Pandey RR, Mohammed I, Uchikawa E, Burger F, Homolka D, Pillai RS

EMDB-52020:
Cryo-EM consensus map of the canine distemper virus tetrameric attachment H glycoprotein in complex with two different Nanobodies
Method: single particle / : Djabeur N, Jeckelmann JM, Fotiadis D

EMDB-52021:
Cryo-EM focused refined map of the canine distemper virus dimer II region of the tetrameric attachment H glycoprotein in complex with two different Nanobodies
Method: single particle / : Djabeur N, Jeckelmann JM, Fotiadis D

EMDB-52023:
Cryo-EM focused refined map of the canine distemper virus dimer I region of the tetrameric attachment H glycoprotein in complex with two different Nanobodies
Method: single particle / : Djabeur N, Jeckelmann JM, Fotiadis D

EMDB-52024:
Cryo-EM structure of the canine distemper virus tetrameric attachment H glycoprotein in complex with two different Nanobodies
Method: single particle / : Djabeur N, Jeckelmann JM, Fotiadis D

PDB-9hbp:
Cryo-EM structure of the canine distemper virus tetrameric attachment H glycoprotein in complex with two different Nanobodies
Method: single particle / : Djabeur N, Jeckelmann JM, Fotiadis D

EMDB-53065:
Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
Method: single particle / : Kovalova T, Krol S, Brzezinski P, Hogbom M

PDB-9qef:
Respiratory supercomplex from Mycobacterium smegmatis with decylubiquinone
Method: single particle / : Kovalova T, Krol S, Brzezinski P, Hogbom M

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-50976:
Mouse Teneurin2 dimer variant A1B0
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

PDB-9g2h:
Mouse Teneurin2 dimer variant A1B0
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

EMDB-51022:
Mouse Teneurin2 dimer variant A0B0
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

PDB-9g42:
Mouse Teneurin2 dimer variant A0B0
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

EMDB-47875:
Human TRPML1 bound to Sybody57
Method: single particle / : Pumroy RP, Christensen CR, Salphati SP, Moiseenkova-Bell VY, Newstead S

PDB-9eba:
Human TRPML1 bound to Sybody57
Method: single particle / : Pumroy RP, Christensen CR, Salphati SP, Moiseenkova-Bell VY, Newstead S

EMDB-56129:
Octameric C. elegans BORC, containing BORCS5, BORCS6, BORCS7, BORCS8, KXD1 and the shared BORC and BLoC-1 subunits, BLOC1S1, BLOC1S2 and Snapin
Method: single particle / : Amann SJ, de Araujo MEG, Grishkovskaya I, Huber LA, Haselbach D

EMDB-50975:
Mouse Teneurin2 dimer variant A1B1
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

PDB-9g2f:
Mouse Teneurin2 dimer variant A1B1
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

EMDB-62886:
Structure of SID-1 in complex with dsRNA
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

EMDB-62887:
Structure of SID-1
Method: single particle / : Kumazaki K, Kusakizako T, Nishizawa T, Nureki O

EMDB-51021:
Mouse Teneurin2 dimer variant A0B1
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

PDB-9g41:
Mouse Teneurin2 dimer variant A0B1
Method: single particle / : Berbeira-Santana M, Zhou JC, el Omari K, Baker L, Seiradake E

EMDB-47874:
Human TRPML1 bound to Sybody94
Method: single particle / : Pumroy RP, Salphati SP, Moiseenkova-Bell VY, Newstead S

PDB-9eb9:
Human TRPML1 bound to Sybody94
Method: single particle / : Pumroy RP, Salphati SP, Moiseenkova-Bell VY, Newstead S

EMDB-56149:
L. pneumophila 3-methylcrotonyl-CoA carboxylase A1B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

PDB-9tqg:
L. pneumophila 3-methylcrotonyl-CoA carboxylase A1B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

EMDB-52860:
Ku70/80 bound to 147 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52861:
Ku70/80 bound to 153 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52879:
Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52912:
Ku70/80 bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52958:
DNA-PK bound to a 153 bp H2AX nucleosome model 1
Method: single particle / : Hall C, Chaplin AK

EMDB-53025:
DNA-PK bound to 153 bp H2AX nucleosome model 2
Method: single particle / : Hall C, Chaplin A

EMDB-53026:
Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-53237:
DNA-PK bound to 153 bp H2AX nucleosome with ATPyS
Method: single particle / : Hall C, Chaplin AK

PDB-9igw:
Ku70/80 bound to 147 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9igx:
Ku70/80 bound to 153 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q80:
Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q8x:
Ku70/80 bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more