[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,981 items for (author: ping & y)

EMDB-35827:
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37652:
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37656:
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37657:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-37762:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)
Method: single particle / : Zhang S, Lin S, Liu JJG

PDB-8iyq:
Structure of CbCas9 bound to 20-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

PDB-8wmh:
Structure of CbCas9 bound to 6-nucleotide complementary DNA substrate
Method: single particle / : Zhang S, Lin S, Liu JJG

PDB-8wmm:
Structure of CbCas9-PcrIIC1 complex bound to 28-bp DNA substrate (20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

PDB-8wmn:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (symmetric 20-nt complementary)
Method: single particle / : Zhang S, Lin S, Liu JJG

PDB-8wr4:
Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex)
Method: single particle / : Zhang S, Lin S, Liu JJG

EMDB-36960:
F8-A22-E4 complex of MPXV in complex with DNA and Ara-CTP
Method: single particle / : Shen YP, Li YN, Yan RH

EMDB-36962:
F8-A22-E4 complex of MPXV in complex with DNA and dCTP
Method: single particle / : Shen YP, Li YN, Yan RH

EMDB-36963:
the local map of DNA and Ara-CTP binding site
Method: single particle / : Shen YP, Li YN, Yan RH

EMDB-36964:
the local map of DNA and dCTP binding site
Method: single particle / : Shen YP, Li YN, Yan RH

PDB-8k8s:
F8-A22-E4 complex of MPXV in complex with DNA and Ara-CTP
Method: single particle / : Shen YP, Li YN, Yan RH

PDB-8k8u:
F8-A22-E4 complex of MPXV in complex with DNA and dCTP
Method: single particle / : Shen YP, Li YN, Yan RH

EMDB-41409:
Cryo-EM structure of PCSK9 mimic HIT01-K21Q-R218E with AMG145 Fab
Method: single particle / : Cheng J, Kwong PD

EMDB-36907:
Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris
Method: single particle / : Wang GL, Qi CH, Yu LJ

PDB-8k5o:
Cryo-EM structure of the RC-LH core comples from Halorhodospira halochloris
Method: single particle / : Wang GL, Qi CH, Yu LJ

EMDB-41152:
Cryo-EM Structure of Spike Glycoprotein from Civet Coronavirus SZ3 in Closed Conformation
Method: single particle / : Bostina M, Hills FR, Eruera A

PDB-8tc5:
Cryo-EM Structure of Spike Glycoprotein from Civet Coronavirus SZ3 in Closed Conformation
Method: single particle / : Bostina M, Hills FR, Eruera A

EMDB-36366:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

PDB-8jjr:
Cryo-EM structure of Symbiodinium photosystem I
Method: single particle / : Zhao LS, Wang N, Li K, Zhang YZ, Liu LN

EMDB-36776:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36777:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron DR1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36778:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36786:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0p:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0q:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric pre-cleavage state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0r:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k15:
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36659:
Structure of human TRPV4 with antagonist A1
Method: single particle / : Fan J, Lei X

EMDB-36660:
Structure of human TRPV4 with antagonist GSK279
Method: single particle / : Fan J, Lei X

EMDB-36675:
Structure of human TRPV4 with antagonist A2
Method: single particle / : Fan J, Lei X

EMDB-36676:
Structure of human TRPV4 with antagonist A2 and RhoA
Method: single particle / : Fan J, Lei X

PDB-8ju5:
Structure of human TRPV4 with antagonist A1
Method: single particle / : Fan J, Lei X

PDB-8ju6:
Structure of human TRPV4 with antagonist GSK279
Method: single particle / : Fan J, Lei X

PDB-8jvi:
Structure of human TRPV4 with antagonist A2
Method: single particle / : Fan J, Lei X

PDB-8jvj:
Structure of human TRPV4 with antagonist A2 and RhoA
Method: single particle / : Fan J, Lei X

EMDB-41149:
Cryo-EM Structure of Spike Glycoprotein from Bat Coronavirus WIV1 in Closed Conformation
Method: single particle / : Bostina M, Hills FR, Eruera A

EMDB-41150:
Cryo-EM Structure of Spike Glycoprotein from Civet Coronavirus 007 in Closed Conformation
Method: single particle / : Bostina M, Hills FR, Eruera AR

PDB-8tc0:
Cryo-EM Structure of Spike Glycoprotein from Bat Coronavirus WIV1 in Closed Conformation
Method: single particle / : Bostina M, Hills FR, Eruera A

PDB-8tc1:
Cryo-EM Structure of Spike Glycoprotein from Civet Coronavirus 007 in Closed Conformation
Method: single particle / : Bostina M, Hills FR, Eruera AR

EMDB-36008:
SIDT1 protein
Method: single particle / : Zhang JT, Jiang DH

EMDB-36009:
transport T2
Method: single particle / : Jiang DH, Zhang JT

PDB-8j6m:
SIDT1 protein
Method: single particle / : Zhang JT, Jiang DH

PDB-8j6o:
transport T2
Method: single particle / : Jiang DH, Zhang JT

EMDB-36779:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

PDB-8k0s:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-36594:
Cryo-EM structure of a designed AAV8-based vector
Method: single particle / : Ke X, Luo S, Zheng Q, Jiang H, Liu F, Sun X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more