Author results

4OJV
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CRYSTAL STRUCTURE OF UNLIGANDED YEAST PDE1
Descriptor:3',5'-cyclic-nucleotide phosphodiesterase 1, SULFATE ION, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Tian, Y., Cui, W., Huang, M., Robinson, H., Wan, Y., Wang, Y., Ke, H.
Deposit date:2014-01-21
Release date:2014-12-03
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate.
Biochemistry, 53, 2014
4OJX
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CRYSTAL STRUCTURE OF YEAST PHOSPHODIESTERASE-1 IN COMPLEX WITH GMP
Descriptor:3',5'-cyclic-nucleotide phosphodiesterase 1, (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Tian, Y., Cui, W., Huang, M., Robinson, H., Wan, Y., Wang, Y., Ke, H.
Deposit date:2014-01-21
Release date:2014-12-03
Last modified:2015-07-01
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate.
Biochemistry, 53, 2014
2MOZ
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STRUCTURE OF THE MEMBRANE PROTEIN MERF, A BACTERIAL MERCURY TRANSPORTER, IMPROVED BY THE INCLUSION OF CHEMICAL SHIFT ANISOTROPY CONSTRAINTS
Descriptor:MerF
Authors:Tian, Y., Lu, G.J., Marassi, F.M., Opella, S.J., Membrane Protein Structures by Solution NMR (MPSbyNMR)
Deposit date:2014-05-07
Release date:2014-07-30
Last modified:2014-09-17
Method:SOLUTION NMR
Cite:Structure of the membrane protein MerF, a bacterial mercury transporter, improved by the inclusion of chemical shift anisotropy constraints.
J.Biomol.Nmr, 60, 2014
3O3I
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CRYSTAL STRUCTURE OF HUMAN HIWI1 PAZ DOMAIN (RESIDUES 277-399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OH AT ITS 3'-END
Descriptor:Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*U)-3')
Authors:Tian, Y., Simanshu, D.K., Ma, J.-B., Patel, D.J.
Deposit date:2010-07-24
Release date:2011-01-12
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3O6E
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CRYSTAL STRUCTURE OF HUMAN HIWI1 PAZ DOMAIN (RESIDUES 277-399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OCH3 AT ITS 3'-END
Descriptor:Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3')
Authors:Tian, Y., Simanshu, D.K., Ma, J.-B., Patel, D.J.
Deposit date:2010-07-28
Release date:2011-01-12
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.904 Å)
Cite:Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3O7V
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CRYSTAL STRUCTURE OF HUMAN HIWI1 (V361M) PAZ DOMAIN (RESIDUES 277-399) IN COMPLEX WITH 14-MER RNA (12-BP + 2-NT OVERHANG) CONTAINING 2'-OCH3 AT ITS 3'-END
Descriptor:Piwi-like protein 1, RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3')
Authors:Tian, Y., Simanshu, D.K., Ma, J.-B., Patel, D.J.
Deposit date:2010-08-01
Release date:2011-01-12
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3O7X
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CRYSTAL STRUCTURE OF HUMAN HILI PAZ DOMAIN
Descriptor:Piwi-like protein 2
Authors:Tian, Y., Simanshu, D.K., Ma, J.-B., Patel, D.J.
Deposit date:2010-08-01
Release date:2011-01-12
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.9248 Å)
Cite:Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains.
Proc.Natl.Acad.Sci.USA, 108, 2011
3RIU
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CRYSTAL STRUCTURE OF DROSOPHILA HEXAMERIC C3PO FORMED BY TRUNCATED TRANSLIN AND TRAX
Descriptor:Translin, Translin associated factor X, isoform B
Authors:Tian, Y., Simanshu, D.K., Patel, D.J.
Deposit date:2011-04-14
Release date:2011-05-11
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Multimeric assembly and biochemical characterization of the Trax-translin endonuclease complex.
Nat.Struct.Mol.Biol., 18, 2011
4NGD
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 12-MER SIRNA HAVING 5'-P AND UU-3' ENDS (1.95 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(P*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', SULFATE ION, ...
Authors:Tian, Y., Simanshu, D.K., Patel, D.J.
Deposit date:2013-11-01
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.958 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NH5
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 14-MER SIRNA HAVING 5'-PUU AND UU-3' ENDS (2.55 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(P*UP*UP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3'
Authors:Tian, Y., Simanshu, D.K., Patel, D.J.
Deposit date:2013-11-04
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
6OE9
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CRYSTAL STRUCTURE OF P204 HIN1 DOMAIN
Descriptor:Interferon-activable protein 204, GLYCEROL, SULFATE ION
Authors:Tian, Y., Yin, Q.
Deposit date:2019-03-27
Release date:2019-07-10
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural analysis of the HIN1 domain of interferon-inducible protein 204.
Acta Crystallogr.,Sect.F, 75, 2019
2H3H
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CRYSTAL STRUCTURE OF THE LIGANDED FORM OF THERMOTOGA MARITIMA GLUCOSE BINDING PROTEIN
Descriptor:Sugar ABC transporter, periplasmic sugar-binding protein, BETA-D-GLUCOSE
Authors:Changela, A., Tian, Y.
Deposit date:2006-05-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-based design of robust glucose biosensors using a Thermotoga maritima periplasmic glucose-binding protein.
Protein Sci., 16, 2007
4NGB
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 12-MER SIRNA HAVING UU-3' ENDS (2.25 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3'
Authors:Simanshu, D.K., Tian, Y., Patel, D.J.
Deposit date:2013-11-01
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGC
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 12-MER SIRNA HAVING UA-3' ENDS (2.1 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*A)-3'
Authors:Simanshu, D.K., Tian, Y., Patel, D.J.
Deposit date:2013-11-01
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGF
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 17-MER SIRNA HAVING 5'-P AND UU-3' ENDS (3.1 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(P*UP*CP*GP*AP*AP*GP*GP*UP*CP*CP*UP*UP*CP*GP*UP*UP*U)-3'
Authors:Simanshu, D.K., Tian, Y., Patel, D.J.
Deposit date:2013-11-01
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NGG
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 13-MER SIRNA HAVING 5'-A AND UU-3' ENDS (2.6 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(*AP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3', PHOSPHATE ION
Authors:Simanshu, D.K., Tian, Y., Patel, D.J.
Deposit date:2013-11-01
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NH3
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 13-MER SIRNA HAVING 5'-PU AND UU-3' ENDS (2.6 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(P*UP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3'
Authors:Simanshu, D.K., Tian, Y., Patel, D.J.
Deposit date:2013-11-04
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.616 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NH6
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 15-MER SIRNA HAVING 5'-PUUU AND UU-3' ENDS (2.55 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(P*UP*UP*UP*GP*CP*GP*AP*AP*UP*UP*CP*GP*CP*UP*U)-3'
Authors:Simanshu, D.K., Tian, Y., Patel, D.J.
Deposit date:2013-11-04
Release date:2014-03-05
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.551 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
4NHA
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STRUCTURE OF HUMAN DICER PLATFORM-PAZ-CONNECTOR HELIX CASSETTE IN COMPLEX WITH 16-MER SIRNA HAVING 5'-P AND UU-3' ENDS (3.4 ANGSTROM RESOLUTION)
Descriptor:Endoribonuclease Dicer, 5'-R(P*GP*CP*GP*UP*UP*GP*GP*CP*CP*AP*AP*CP*GP*CP*UP*U)-3'
Authors:Simanshu, D.K., Tian, Y., Ma, J.-B., Patel, D.J.
Deposit date:2013-11-04
Release date:2014-03-05
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (3.401 Å)
Cite:A Phosphate-Binding Pocket within the Platform-PAZ-Connector Helix Cassette of Human Dicer.
Mol.Cell, 53, 2014
6K9L
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4.27 ANGSTROM RESOLUTION CRYO-EM STRUCTURE OF HUMAN DIMERIC ATM KINASE
Descriptor:Serine-protein kinase ATM
Authors:Xiao, J., Liu, M., Qi, Y., Chaban, Y., Gao, C., Tian, Y., Yu, Z., Li, J., Zhang, P., Xu, Y.
Deposit date:2019-06-16
Release date:2019-12-25
Method:ELECTRON MICROSCOPY (4.27 Å)
Cite:Structural insights into the activation of ATM kinase.
Cell Res., 29, 2019
2N2L
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NMR STRUCTURE OF YERSINIA PESTIS AIL (ATTACHMENT INVASION LOCUS) IN DECYLPHOSPHOCHOLINE MICELLES CALCULATED WITH IMPLICIT MEMBRANE SOLVATION
Descriptor:Outer membrane protein X
Authors:Marassi, F.M., Ding, Y., Tian, Y., Schwieters, C.D., Yao, Y.
Deposit date:2015-05-10
Release date:2015-07-22
Last modified:2015-10-07
Method:SOLUTION NMR
Cite:Backbone structure of Yersinia pestis Ail determined in micelles by NMR-restrained simulated annealing with implicit membrane solvation.
J.Biomol.Nmr, 63, 2015
6IGM
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CRYO-EM STRUCTURE OF HUMAN SRCAP COMPLEX
Descriptor:RuvB-like 1, RuvB-like 2, Actin-related protein 6, ...
Authors:Feng, Y., Tian, Y., Wu, Z., Xu, Y.
Deposit date:2018-09-25
Release date:2019-07-24
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structure of human SRCAP complex.
Cell Res., 28, 2018
2LK9
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STRUCTURE OF BST-2/TETHERIN TRANSMEMBRANE DOMAIN
Descriptor:Bone marrow stromal antigen 2
Authors:Skasko, M., Wang, Y., Tian, Y., Tokarev, A., Munguia, J., Ruiz, A., Stephens, E., Opella, S., Guatelli, J.
Deposit date:2011-10-07
Release date:2011-11-09
Last modified:2012-01-18
Method:SOLUTION NMR
Cite:HIV-1 Vpu Protein Antagonizes Innate Restriction Factor BST-2 via Lipid-embedded Helix-Helix Interactions.
J.Biol.Chem., 287, 2012
4WQN
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CRYSTAL STRUCTURE OF N6-METHYLADENOSINE RNA READER YTHDF2
Descriptor:YTH domain-containing family protein 2, GLYCEROL, 1,2-ETHANEDIOL
Authors:Zhu, T., Roundtree, I.A., Wang, P., Wang, X., Wang, L., Sun, C., Tian, Y., Li, J., He, C., Xu, Y.
Deposit date:2014-10-22
Release date:2014-11-19
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (2.121 Å)
Cite:Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine.
Cell Res., 24, 2014
4YCG
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PRO-BONE MORPHOGENETIC PROTEIN 9
Descriptor:Bone Morphogenetic Protein 9 Growth Factor Domain, Bone Morphogenetic Protein 9 Prodomain, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Mi, L.-Z., Brown, C.T., Gao, Y., Tian, Y., Le, V., Walz, T., Springer, T.A.
Deposit date:2015-02-20
Release date:2015-03-04
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of bone morphogenetic protein 9 procomplex.
Proc.Natl.Acad.Sci.USA, 112, 2015