1K85 | | SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE III DOMAIN FROM BACILLUS CIRCULANS WL-12 CHITINASE A1. | | Descriptor: | CHITINASE A1 | | Authors: | Jee, J.G., Ikegami, T., Hashimoto, M., Kawabata, T., Ikeguchi, M., Watanabe, T., Shirakawa, M. | | Deposit date: | 2001-10-23 | | Release date: | 2002-12-18 | | Last modified: | 2011-07-13 | | Method: | SOLUTION NMR | | Cite: | Solution Structure of the Fibronectin Type III Domain
from Bacillus circulans WL-12 Chitinase A1
J.Biol.Chem., 277, 2002
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2NOO | | CRYSTAL STRUCTURE OF MUTANT NIKA | | Descriptor: | Nickel-binding periplasmic protein, IODIDE ION, NICKEL (II) ION | | Authors: | Addy, C., Ohara, M., Kawai, F., Kidera, A., Ikeguchi, M., Fuchigami, S., Osawa, M., Shimada, I., Park, S.Y., Tame, J.R.H., Heddle, J.G. | | Deposit date: | 2006-10-26 | | Release date: | 2007-01-23 | | Last modified: | 2017-10-18 | | Method: | X-RAY DIFFRACTION (1.65 Å) | | Cite: | Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
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2RPQ | | SOLUTION STRUCTURE OF A SUMO-INTERACTING MOTIF OF MBD1-CONTAINING CHROMATIN-ASSOCIATED FACTOR 1 BOUND TO SUMO-3 | | Descriptor: | Small ubiquitin-related modifier 2, Activating transcription factor 7-interacting protein 1 | | Authors: | Sekiyama, N., Ikegami, T., Yamane, T., Ikeguchi, M., Uchimura, Y., Baba, D., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M. | | Deposit date: | 2008-07-07 | | Release date: | 2008-10-07 | | Last modified: | 2015-12-09 | | Method: | SOLUTION NMR | | Cite: | Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
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2RVQ | | SOLUTION STRUCTURE OF THE ISOLATED HISTONE H2A-H2B HETERODIMER | | Descriptor: | Histone H2A type 1-B/E, Histone H2B type 1-J | | Authors: | Moriwaki, Y., Yamane, T., Ohtomo, H., Ikeguchi, M., Kurita, J., Sato, M., Nagadoi, A., Shimojo, H., Nishimura, Y. | | Deposit date: | 2016-03-28 | | Release date: | 2016-05-25 | | Method: | SOLUTION NMR | | Cite: | Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
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3A57 | | CRYSTAL STRUCTURE OF THERMOSTABLE DIRECT HEMOLYSIN | | Descriptor: | Thermostable direct hemolysin 2 | | Authors: | Hashimoto, H., Yanagihara, I., Nakahira, K., Hamada, D., Ikegami, T., Mayanagi, K., Kaieda, S., Fukui, T., Ohnishi, K., Kajiyama, S., Yamane, T., Ikeguchi, M., Honda, T., Shimizu, T., Sato, M. | | Deposit date: | 2009-08-03 | | Release date: | 2010-03-31 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
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3VIQ | | CRYSTAL STRUCTURE OF SWI5-SFR1 COMPLEX FROM FISSION YEAST | | Descriptor: | Swi5-dependent recombination DNA repair protein 1, Mating-type switching protein swi5, GLYCEROL, ... | | Authors: | Kuwabara, N., Murayama, Y., Hashimoto, H., Kokabu, Y., Ikeguchi, M., Sato, M., Mayanagi, K., Tsutsui, Y., Iwasaki, H., Shimizu, T. | | Deposit date: | 2011-10-06 | | Release date: | 2012-08-22 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
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2RQ6 | | SOLUTION STRUCTURE OF THE EPSILON SUBUNIT OF THE F1-ATPASE FROM THERMOSYNECHOCOCCUS ELONGATUS BP-1 | | Descriptor: | ATP synthase epsilon chain | | Authors: | Yagi, H., Konno, H., Murakami-Fuse, T., Oroguchi, H., Akutsu, T., Ikeguchi, M., Hisabori, T. | | Deposit date: | 2009-03-03 | | Release date: | 2010-01-12 | | Last modified: | 2011-07-13 | | Method: | SOLUTION NMR | | Cite: | Structural and functional analysis of the intrinsic inhibitor subunit epsilon of F1-ATPase from photosynthetic organisms.
Biochem.J., 425, 2010
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2RQ7 | | SOLUTION STRUCTURE OF THE EPSILON SUBUNIT CHIMERA COMBINING THE N-TERMINAL BETA-SANDWICH DOMAIN FROM T. ELONGATUS BP-1 F1 AND THE C-TERMINAL ALPHA-HELICAL DOMAIN FROM SPINACH CHLOROPLAST F1 | | Descriptor: | ATP synthase epsilon chain,ATP synthase epsilon chain, chloroplastic | | Authors: | Yagi, H., Konno, H., Murakami-Fuse, T., Oroguchi, H., Akutsu, T., Ikeguchi, M., Hisabori, T. | | Deposit date: | 2009-03-03 | | Release date: | 2010-01-12 | | Last modified: | 2020-01-01 | | Method: | SOLUTION NMR | | Cite: | Structural and functional analysis of the intrinsic inhibitor subunit epsilon of F1-ATPase from photosynthetic organisms.
Biochem.J., 425, 2010
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2Z33 | | SOLUTION STRUCTURE OF THE DNA COMPLEX OF PHOB DNA-BINDING/TRANSACTIVATION DOMAIN | | Descriptor: | 5'-D(*AP*CP*TP*GP*TP*CP*AP*TP*AP*AP*AP*TP*CP*TP*GP*T)-3', 5'-D(*AP*CP*AP*GP*AP*TP*TP*TP*AP*TP*GP*AP*CP*AP*GP*T)-3', Phosphate regulon transcriptional regulatory protein phoB | | Authors: | Yamane, T., Okamura, H., Ikeguchi, M., Nishimura, Y., Kidera, A. | | Deposit date: | 2007-05-31 | | Release date: | 2008-04-22 | | Last modified: | 2011-07-13 | | Method: | SOLUTION NMR | | Cite: | Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Proteins, 71, 2008
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3KZA | | CRYSTAL STRUCTURE OF GYUBA, A PATCHED CHIMERA OF B-LACTGLOBULIN | | Descriptor: | Beta-lactoglobulin | | Authors: | Tsuge, H., Ohtomo, H., Utsunomiya, H., Konuma, T., Ikeguchi, M. | | Deposit date: | 2009-12-08 | | Release date: | 2010-12-22 | | Last modified: | 2017-08-23 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Structure and stability of Gyuba, a patched chimera of b-lactoglobulin
Protein Sci., 20, 2011
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1V8Z | | X-RAY CRYSTAL STRUCTURE OF THE TRYPTOPHAN SYNTHASE B2 SUBUNIT FROM HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS | | Descriptor: | Tryptophan synthase beta chain 1, SODIUM ION, PYRIDOXAL-5'-PHOSPHATE | | Authors: | Hioki, Y., Ogasahara, K., Lee, S.J., Ma, J., Ishida, M., Yamagata, Y., Matsuura, Y., Ota, M., Kuramitsu, S., Yutani, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2004-01-15 | | Release date: | 2005-02-22 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2.21 Å) | | Cite: | The crystal structure of the tryptophan synthase beta subunit from the hyperthermophile Pyrococcus furiosus. Investigation of stabilization factors
Eur.J.Biochem., 271, 2004
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5WVO | | CRYSTAL STRUCTURE OF DNMT1 RFTS DOMAIN IN COMPLEX WITH K18/K23 MONO-UBIQUITYLATED HISTONE H3 | | Descriptor: | Ubiquitin, DNA (cytosine-5)-methyltransferase 1, Histone H3.1, ... | | Authors: | Ishiyama, S., Nishiyama, A., Nakanishi, M., Arita, K. | | Deposit date: | 2016-12-28 | | Release date: | 2017-11-15 | | Method: | X-RAY DIFFRACTION (1.997 Å) | | Cite: | Structure of the Dnmt1 Reader Module Complexed with a Unique Two-Mono-Ubiquitin Mark on Histone H3 Reveals the Basis for DNA Methylation Maintenance
Mol. Cell, 68, 2017
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3VIR | | CRYSTAL STRCTURE OF SWI5 FROM FISSION YEAST | | Descriptor: | Mating-type switching protein swi5, B-OCTYLGLUCOSIDE | | Authors: | Kuwabara, N., Yamada, N., Hashimoto, H., Sato, M., Iwasaki, H., Shimizu, T. | | Deposit date: | 2011-10-06 | | Release date: | 2012-08-22 | | Last modified: | 2018-02-14 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Mechanistic insights into the activation of Rad51-mediated strand exchange from the structure of a recombination activator, the Swi5-Sfr1 complex
Structure, 20, 2012
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5GGF | |
5GGG | |
5GGI | | CRYSTAL STRUCTURE OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH MN, UDP AND MANNOSYL-PEPTIDE | | Descriptor: | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, mannosyl-peptide, URIDINE-5'-DIPHOSPHATE, ... | | Authors: | Kuwabara, N., Senda, T., Kato, R. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-10 | | Last modified: | 2016-08-31 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
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5GGJ | | CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH MAN-ALPHA-PNP | | Descriptor: | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, 4'-NITROPHENYL-ALPHA-D-MANNOPYRANOSIDE | | Authors: | Kuwabara, N., Senda, T., Kato, R. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-10 | | Last modified: | 2016-08-31 | | Method: | X-RAY DIFFRACTION (1.424 Å) | | Cite: | Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
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5GGK | | CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH MAN-BETA-PNP | | Descriptor: | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, 4-Nitrophenyl-beta-D-mannopyranoside, GLYCEROL, ... | | Authors: | Kuwabara, N., Senda, T., Kato, R. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-10 | | Last modified: | 2016-08-31 | | Method: | X-RAY DIFFRACTION (1.3 Å) | | Cite: | Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
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5GGL | | CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GLCNAC-ALPHA-PNP | | Descriptor: | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, N-[(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-2-(4-nitrophenoxy)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide | | Authors: | Kuwabara, N., Senda, T., Kato, R. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-10 | | Last modified: | 2016-08-31 | | Method: | X-RAY DIFFRACTION (1.27 Å) | | Cite: | Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
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5GGN | | CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GLCNAC-BETA-PNP | | Descriptor: | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide | | Authors: | Kuwabara, N., Senda, T., Kato, R. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-10 | | Last modified: | 2016-08-31 | | Method: | X-RAY DIFFRACTION (1.211 Å) | | Cite: | Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
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5GGO | | CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GALNAC-BETA1,3-GLCNAC-BETA-PNP | | Descriptor: | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, N-[(2S,3R,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-(4-nitrophenoxy)oxan-3-yl]ethanamide, N-ACETYL-D-GALACTOSAMINE, ... | | Authors: | Kuwabara, N., Senda, T., Kato, R. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-10 | | Last modified: | 2016-08-31 | | Method: | X-RAY DIFFRACTION (1.502 Å) | | Cite: | Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
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5GGP | | CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PROTEIN O-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE IN COMPLEX WITH GLCNAC-BETA1,2-MAN-PEPTIDE | | Descriptor: | Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1, 10-mer Peptide from Dystroglycan, SODIUM ION, ... | | Authors: | Kuwabara, N., Senda, T., Kato, R. | | Deposit date: | 2016-06-16 | | Release date: | 2016-08-10 | | Last modified: | 2016-08-31 | | Method: | X-RAY DIFFRACTION (1.599 Å) | | Cite: | Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
Proc.Natl.Acad.Sci.USA, 113, 2016
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5B41 | | CRYSTAL STRUCTURE OF VDR-LBD COMPLEXED WITH 2-METHYLIDENE-19-NOR-1A,25-DIHYDROXYVITAMIN D3 | | Descriptor: | Vitamin D3 receptor, Mediator of RNA polymerase II transcription subunit 1, (1R,3R)-5-(2-((1R,3aS,7aR,E)-1-((R)-6-hydroxy-6-methylheptan-2-yl)-7a-methyloctahydro-4H-inden-4-ylidene)ethylidene)-2-methylenecyclohexane-1,3-diol | | Authors: | Anami, Y., Itoh, T., Yamamoto, K. | | Deposit date: | 2016-03-23 | | Release date: | 2016-12-07 | | Method: | X-RAY DIFFRACTION (1.89 Å) | | Cite: | Apo- and Antagonist-Binding Structures of Vitamin D Receptor Ligand-Binding Domain Revealed by Hybrid Approach Combining Small-Angle X-ray Scattering and Molecular Dynamics
J.Med.Chem., 59, 2016
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