2OB7 | | STRUCTURE OF TMRNA-(SMPB)2 COMPLEX AS INFERRED FROM CRYO-EM | | Descriptor: | transfer-messenger RNA, 16S ribosomal RNA, SsrA-binding protein | | Authors: | Frank, J., Felden, B., Gillet, R., Li, W. | | Deposit date: | 2006-12-18 | | Release date: | 2007-01-23 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (13.6 Å) | | Cite: | Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1.
J.Biol.Chem., 282, 2007
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3EP2 | | MODEL OF PHE-TRNA(PHE) IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM | | Descriptor: | Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ... | | Authors: | Frank, J., Li, W., Agirrezabala, X. | | Deposit date: | 2008-09-29 | | Release date: | 2008-12-16 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (9 Å) | | Cite: | Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
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2Z9Q | |
3EQ3 | | MODEL OF TRNA(TRP)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM | | Descriptor: | Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ... | | Authors: | Frank, J., Li, W., Agirrezabala, X. | | Deposit date: | 2008-09-30 | | Release date: | 2008-12-16 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (9 Å) | | Cite: | Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
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3EQ4 | | MODEL OF TRNA(LEU)-EF-TU IN THE RIBOSOMAL PRE-ACCOMMODATED STATE REVEALED BY CRYO-EM | | Descriptor: | Elongation factor Tu, 30S ribosomal protein S12, 50S ribosomal protein L11, ... | | Authors: | Frank, J., Li, W., Agirrezabala, X. | | Deposit date: | 2008-09-30 | | Release date: | 2008-12-16 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (12 Å) | | Cite: | Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM.
Embo J., 27, 2008
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6O7K | | 30S INITIATION COMPLEX | | Descriptor: | Translation initiation factor IF-1, Translation initiation factor IF-2, 16S, ... | | Authors: | Frank, J., Gonzalez Jr., R.L., kaledhonkar, S., Fu, Z., Caban, K., Li, W., Chen, B., Sun, M. | | Deposit date: | 2019-03-08 | | Release date: | 2019-05-29 | | Last modified: | 2019-07-03 | | Method: | ELECTRON MICROSCOPY (4.2 Å) | | Cite: | Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.
Nature, 570, 2019
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6O9J | | 70S ELONGATION COMPETENT RIBOSOME | | Descriptor: | 5S rRNA, 23S rRNA, 50S ribosomal protein L25, ... | | Authors: | Frank, J., Gonzalez Jr., R.L., Kaledhonkar, S., Fu, Z., Caban, K., Li, W., Chen, B., Sun, M. | | Deposit date: | 2019-03-14 | | Release date: | 2019-05-29 | | Last modified: | 2019-07-03 | | Method: | ELECTRON MICROSCOPY (3.9 Å) | | Cite: | Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.
Nature, 570, 2019
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6O9K | | 70S INITIATION COMPLEX | | Descriptor: | 16S rRNA, 30S ribosomal protein S2, 30S ribosomal protein S3, ... | | Authors: | Frank, J., Gonzalez Jr., R.L., kaledhonkar, S., Fu, Z., Caban, K., Li, W., Chen, B., Sun, M. | | Deposit date: | 2019-03-14 | | Release date: | 2019-05-29 | | Last modified: | 2019-07-03 | | Method: | ELECTRON MICROSCOPY (4 Å) | | Cite: | Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.
Nature, 570, 2019
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4V4V | |
4V4W | |
1JQT | | FITTING OF L11 PROTEIN IN THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME | | Descriptor: | 50S Ribosomal protein L11 | | Authors: | Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J. | | Deposit date: | 2001-08-07 | | Release date: | 2001-09-07 | | Last modified: | 2011-07-13 | | Method: | ELECTRON MICROSCOPY (18 Å) | | Cite: | Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
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4V69 | | TERNARY COMPLEX-BOUND E.COLI 70S RIBOSOME. | | Descriptor: | 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... | | Authors: | Villa, E., Sengupta, J., Trabuco, L.G., LeBarron, J., Baxter, W.T., Shaikh, T.R., Grassucci, R.A., Nissen, P., Ehrenberg, M., Schulten, K., Frank, J. | | Deposit date: | 2008-12-11 | | Release date: | 2014-07-09 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (6.7 Å) | | Cite: | Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
Proc.Natl.Acad.Sci.USA, 106, 2009
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1ZN1 | | COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION COMPLEX | | Descriptor: | ribosomal 23S RNA, ribosomal 16S RNA, Ribosome recycling factor, ... | | Authors: | Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J. | | Deposit date: | 2005-05-11 | | Release date: | 2005-06-14 | | Last modified: | 2018-01-31 | | Method: | ELECTRON MICROSCOPY (14.1 Å) | | Cite: | Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
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4V47 | | REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF-G.GTP STATE OF E. COLI 70S RIBOSOME | | Descriptor: | 23S ribosomal RNA, 5S ribosomal RNA, 50S ribosomal protein L2, ... | | Authors: | Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J. | | Deposit date: | 2003-05-06 | | Release date: | 2014-07-09 | | Last modified: | 2018-01-24 | | Method: | ELECTRON MICROSCOPY (12.3 Å) | | Cite: | Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
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4V48 | | REAL SPACE REFINED COORDINATES OF THE 30S AND 50S SUBUNITS FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKE STATE OF E. COLI 70S RIBOSOME | | Descriptor: | 23S ribosomal RNA, 5S ribosomal RNA, tRNA-PHE, ... | | Authors: | Gao, H., Sengupta, J., Valle, M., Korostelev, A., Eswar, N., Stagg, S.M., Van Roey, P., Agrawal, R.K., Harvey, S.T., Sali, A., Chapman, M.S., Frank, J. | | Deposit date: | 2003-05-06 | | Release date: | 2014-07-09 | | Last modified: | 2018-01-24 | | Method: | ELECTRON MICROSCOPY (11.5 Å) | | Cite: | Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
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1JQM | | FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G, GDP AND FUSIDIC ACID | | Descriptor: | 50S Ribosomal protein L11, Elongation Factor G | | Authors: | Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J. | | Deposit date: | 2001-08-07 | | Release date: | 2001-09-07 | | Last modified: | 2011-07-13 | | Method: | ELECTRON MICROSCOPY (18 Å) | | Cite: | Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
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1JQS | | FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G' AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G AND GMPPCP, A NONHYDROLYSABLE GTP ANALOG | | Descriptor: | 50S Ribosomal protein L11, Elongation Factor G | | Authors: | Agrawal, R.K., Linde, J., Segupta, J., Nierhaus, K.H., Frank, J. | | Deposit date: | 2001-08-07 | | Release date: | 2001-09-07 | | Last modified: | 2011-07-13 | | Method: | ELECTRON MICROSCOPY (18 Å) | | Cite: | Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation.
J.Mol.Biol., 311, 2001
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1ZC8 | | COORDINATES OF TMRNA, SMPB, EF-TU AND H44 FITTED INTO CRYO-EM MAP OF THE 70S RIBOSOME AND TMRNA COMPLEX | | Descriptor: | TLD 16S ribosomal RNA, H2 16S rRNA, H2b d mRNA, ... | | Authors: | Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J. | | Deposit date: | 2005-04-11 | | Release date: | 2005-04-19 | | Last modified: | 2013-12-11 | | Method: | ELECTRON MICROSCOPY (13 Å) | | Cite: | Visualizing tmRNA Entry into a Stalled Ribosome
Science, 300, 2003
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1ZN0 | | COORDINATES OF RRF AND EF-G FITTED INTO CRYO-EM MAP OF THE 50S SUBUNIT BOUND WITH BOTH EF-G (GDPNP) AND RRF | | Descriptor: | 16S RIBOSOMAL RNA, Ribosome recycling factor, ELONGATION FACTOR G | | Authors: | Gao, N., Zavialov, A.V., Li, W., Sengupta, J., Valle, M., Gursky, R.P., Ehrenberg, M., Frank, J. | | Deposit date: | 2005-05-11 | | Release date: | 2005-06-14 | | Last modified: | 2011-07-13 | | Method: | ELECTRON MICROSCOPY (15.5 Å) | | Cite: | Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Mol.Cell, 18, 2005
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4V4B | | STRUCTURE OF THE RIBOSOMAL 80S-EEF2-SORDARIN COMPLEX FROM YEAST OBTAINED BY DOCKING ATOMIC MODELS FOR RNA AND PROTEIN COMPONENTS INTO A 11.7 A CRYO-EM MAP. | | Descriptor: | 18S ribosomal RNA, Elongation factor 2, 40S ribosomal protein S0-A, ... | | Authors: | Spahn, C.M., Gomez-Lorenzo, M.G., Grassucci, R.A., Jorgensen, R., Andersen, G.R., Beckmann, R., Penczek, P.A., Ballesta, J.P.G., Frank, J. | | Deposit date: | 2004-01-06 | | Release date: | 2014-07-09 | | Last modified: | 2015-03-18 | | Method: | ELECTRON MICROSCOPY (11.7 Å) | | Cite: | Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
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2RDO | | 50S SUBUNIT WITH EF-G(GDPNP) AND RRF BOUND | | Descriptor: | 5S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 50S ribosomal protein L25, ... | | Authors: | Gao, N., Zavialov, A.V., Ehrenberg, M., Frank, J. | | Deposit date: | 2007-09-24 | | Release date: | 2008-03-04 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (9.1 Å) | | Cite: | Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.
J.Mol.Biol., 374, 2007
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1LS2 | | FITTING OF EF-TU AND TRNA IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME | | Descriptor: | Phenylalanine transfer RNA, Elongation Factor Tu | | Authors: | Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J. | | Deposit date: | 2002-05-16 | | Release date: | 2002-06-26 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (16.799999 Å) | | Cite: | Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
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1LU3 | | SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-EM MAP OF AN EF-TU TERNARY COMPLEX (GDP AND KIRROMYCIN) BOUND TO E. COLI 70S RIBOSOME | | Descriptor: | PHENYLALANINE TRANSFER RNA | | Authors: | Valle, M., Sengupta, J., Swami, N.K., Grassucci, R.A., Burkhardt, N., Nierhaus, K.H., Agrawal, R.K., Frank, J. | | Deposit date: | 2002-05-21 | | Release date: | 2002-06-26 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (16.799999 Å) | | Cite: | Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.
EMBO J., 21, 2002
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1MI6 | | DOCKING OF THE MODIFIED RF2 X-RAY STRUCTURE INTO THE LOW RESOLUTION CRYO-EM MAP OF RF2 E.COLI 70S RIBOSOME | | Descriptor: | peptide chain release factor RF-2 | | Authors: | Rawat, U.B.S., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J. | | Deposit date: | 2002-08-22 | | Release date: | 2003-01-14 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (10.9 Å) | | Cite: | A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
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1MVR | | DECODING CENTER & PEPTIDYL TRANSFERASE CENTER FROM THE X-RAY STRUCTURE OF THE THERMUS THERMOPHILUS 70S RIBOSOME, ALIGNED TO THE LOW RESOLUTION CRYO-EM MAP OF E.COLI 70S RIBOSOME | | Descriptor: | mRNA, triplet codon (A-site), Helix 34 of 16S rRNA, ... | | Authors: | Rawat, U.B., Zavialov, A.V., Sengupta, J., Valle, M., Grassucci, R.A., Linde, J., Vestergaard, B., Ehrenberg, M., Frank, J. | | Deposit date: | 2002-09-26 | | Release date: | 2003-04-01 | | Last modified: | 2018-07-18 | | Method: | ELECTRON MICROSCOPY (12.8 Å) | | Cite: | A cryo-electron microscopic study of ribosome-bound termination factor RF2
Nature, 421, 2003
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